miRNA display CGI


Results 21 - 40 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 2875 0.73 0.245365
Target:  5'- uGCCGCCGgccacgcgcagguccCCGCGcaggcGCaucaGCACCAGCGCg -3'
miRNA:   3'- -CGGCGGUa--------------GGCGC-----CGg---CGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 3052 0.71 0.320659
Target:  5'- gGCCGCCAggucgCCGuCGaaGCCcucCGCCAGCGCc -3'
miRNA:   3'- -CGGCGGUa----GGC-GC--CGGc--GUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 3134 0.75 0.183127
Target:  5'- cCCGCC-UCCGCGcGCCGgccgccgccaccacCGCCGGCGCc -3'
miRNA:   3'- cGGCGGuAGGCGC-CGGC--------------GUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 3180 0.68 0.482622
Target:  5'- cGUCGUCGUCguCGuCGGCCccgGCCGGCGCg -3'
miRNA:   3'- -CGGCGGUAG--GC-GCCGGcg-UGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 3301 0.69 0.421196
Target:  5'- cGCCGCCG-CCgacggcaacgggGCGGCgGCGgCGGCGg -3'
miRNA:   3'- -CGGCGGUaGG------------CGCCGgCGUgGUCGUg -5'
5249 3' -63 NC_001798.1 + 3381 0.7 0.342182
Target:  5'- cGCCGUCGUCgGgGGuUCGCGCCccggucAGCGCc -3'
miRNA:   3'- -CGGCGGUAGgCgCC-GGCGUGG------UCGUG- -5'
5249 3' -63 NC_001798.1 + 3498 0.68 0.446959
Target:  5'- gGCUcaugGCCA-CgGCGGCCGCcACguGCGCc -3'
miRNA:   3'- -CGG----CGGUaGgCGCCGGCG-UGguCGUG- -5'
5249 3' -63 NC_001798.1 + 3986 0.68 0.482622
Target:  5'- aGCuCGaCCG-CCGgGGCCGC-CCGGC-Cg -3'
miRNA:   3'- -CG-GC-GGUaGGCgCCGGCGuGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 4016 0.68 0.482622
Target:  5'- aGCgGCCcguggcgUCGCGGCCGgcCACCGccGCGCg -3'
miRNA:   3'- -CGgCGGua-----GGCGCCGGC--GUGGU--CGUG- -5'
5249 3' -63 NC_001798.1 + 4077 0.66 0.586694
Target:  5'- cGCgGUCG-CCGCGGggguCCGgGCCGGgGCg -3'
miRNA:   3'- -CGgCGGUaGGCGCC----GGCgUGGUCgUG- -5'
5249 3' -63 NC_001798.1 + 4137 0.71 0.320659
Target:  5'- cGCCGCCc-CCGgGGCCcuCGCgGGCACc -3'
miRNA:   3'- -CGGCGGuaGGCgCCGGc-GUGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 4350 0.67 0.53851
Target:  5'- gGCgGCCGagCGcCGGCggggggCGCGCCGGCGg -3'
miRNA:   3'- -CGgCGGUagGC-GCCG------GCGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 4711 0.67 0.511179
Target:  5'- -aCGCCGUCCGCGGCagGCucgucgacggccuccCCGGaCGCc -3'
miRNA:   3'- cgGCGGUAGGCGCCGg-CGu--------------GGUC-GUG- -5'
5249 3' -63 NC_001798.1 + 4755 0.66 0.606218
Target:  5'- gGCCGCC--UCGuCGGCaucgGCAUCGGCGg -3'
miRNA:   3'- -CGGCGGuaGGC-GCCGg---CGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 5374 0.69 0.421196
Target:  5'- cCCGCgCGUCCGCGuCCGUGgCGGCGg -3'
miRNA:   3'- cGGCG-GUAGGCGCcGGCGUgGUCGUg -5'
5249 3' -63 NC_001798.1 + 5415 0.72 0.287076
Target:  5'- cGCCGCCGcUCCgcccgcGCGGCaucucauuaGCGcCCGGCGCg -3'
miRNA:   3'- -CGGCGGU-AGG------CGCCGg--------CGU-GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 5957 0.71 0.334894
Target:  5'- gGCCGgCGUCC-CGGUCGCcGCC-GCACc -3'
miRNA:   3'- -CGGCgGUAGGcGCCGGCG-UGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 7893 0.79 0.092127
Target:  5'- gGCCGCCAUgaauuuuaucgCCGCGGCUGCGCCcuGCGu -3'
miRNA:   3'- -CGGCGGUA-----------GGCGCCGGCGUGGu-CGUg -5'
5249 3' -63 NC_001798.1 + 9033 0.68 0.482622
Target:  5'- aCCGCCccCCGCaGCCaGCGCaCGGCGa -3'
miRNA:   3'- cGGCGGuaGGCGcCGG-CGUG-GUCGUg -5'
5249 3' -63 NC_001798.1 + 9124 0.74 0.193509
Target:  5'- aGCCGCCgcgaggugGUCUGCGGCaCGCggGCgCGGCGCc -3'
miRNA:   3'- -CGGCGG--------UAGGCGCCG-GCG--UG-GUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.