miRNA display CGI


Results 41 - 60 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 9560 0.71 0.334894
Target:  5'- cCCGCCAggaGCGcCUGCGCCAGCAg -3'
miRNA:   3'- cGGCGGUaggCGCcGGCGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 9630 0.67 0.535659
Target:  5'- gGCCGCCcccagcaCCGCcccgaggcgcagcgGGCCGCGCgCggagGGCGCg -3'
miRNA:   3'- -CGGCGGua-----GGCG--------------CCGGCGUG-G----UCGUG- -5'
5249 3' -63 NC_001798.1 + 9971 0.67 0.500962
Target:  5'- aGCCGgCGUaCUGCGGaCCGCcaGgCGGUACg -3'
miRNA:   3'- -CGGCgGUA-GGCGCC-GGCG--UgGUCGUG- -5'
5249 3' -63 NC_001798.1 + 14814 0.66 0.56729
Target:  5'- cGCC-CCG-CC-CGGCCGCGCCAaaguuGUGCu -3'
miRNA:   3'- -CGGcGGUaGGcGCCGGCGUGGU-----CGUG- -5'
5249 3' -63 NC_001798.1 + 15311 0.68 0.464612
Target:  5'- aCCGaaaCGUUgGCGGCCGagggccCCGGCGCg -3'
miRNA:   3'- cGGCg--GUAGgCGCCGGCgu----GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 15568 0.67 0.548053
Target:  5'- uGCCGCCG-CCGCGGCgGgGaguGGCGa -3'
miRNA:   3'- -CGGCGGUaGGCGCCGgCgUgg-UCGUg -5'
5249 3' -63 NC_001798.1 + 15992 0.67 0.548053
Target:  5'- -gUGCCAUCCgaauaaacguGCGGCCcguaaucccCACCAGCAg -3'
miRNA:   3'- cgGCGGUAGG----------CGCCGGc--------GUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 16295 0.67 0.516789
Target:  5'- cGCCGCCgaguucgaucugguAcucgaaugucUCCGCGGCgCggucccagaucgGCACCAGCAg -3'
miRNA:   3'- -CGGCGG--------------U----------AGGCGCCG-G------------CGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 16549 0.74 0.198182
Target:  5'- -gCGCCAaaUCCGCguaccGGCgGCGCCAGCAa -3'
miRNA:   3'- cgGCGGU--AGGCG-----CCGgCGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 17119 0.67 0.548053
Target:  5'- gGCCGCCcgCgaGCGGUagUGCGCggugaGGCGCg -3'
miRNA:   3'- -CGGCGGuaGg-CGCCG--GCGUGg----UCGUG- -5'
5249 3' -63 NC_001798.1 + 17228 0.69 0.429685
Target:  5'- gGCCGCCuUUCGgGGUCGCGCgGGg-- -3'
miRNA:   3'- -CGGCGGuAGGCgCCGGCGUGgUCgug -5'
5249 3' -63 NC_001798.1 + 18302 0.66 0.576974
Target:  5'- uGCuCGCCGggaaggCCGgGGCCGUguuugucuCCGGCGg -3'
miRNA:   3'- -CG-GCGGUa-----GGCgCCGGCGu-------GGUCGUg -5'
5249 3' -63 NC_001798.1 + 18599 0.67 0.529026
Target:  5'- aGCCcCCccggGUCCGCGcGCCGUcccGCCGuGCAUa -3'
miRNA:   3'- -CGGcGG----UAGGCGC-CGGCG---UGGU-CGUG- -5'
5249 3' -63 NC_001798.1 + 21702 0.7 0.380319
Target:  5'- cGCUGCCGUCC-CGGUCucCGCC-GCGCa -3'
miRNA:   3'- -CGGCGGUAGGcGCCGGc-GUGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 22260 0.67 0.529026
Target:  5'- aGCCGCCcgcgCCGgGcgcuaaugagauGCCGCGCgGGCGg -3'
miRNA:   3'- -CGGCGGua--GGCgC------------CGGCGUGgUCGUg -5'
5249 3' -63 NC_001798.1 + 22326 0.73 0.256324
Target:  5'- cGCCGCCAcggaCGCGGaCGCGCgGGCGu -3'
miRNA:   3'- -CGGCGGUag--GCGCCgGCGUGgUCGUg -5'
5249 3' -63 NC_001798.1 + 22520 0.69 0.403705
Target:  5'- cGCgGCUAccgaCGCGGCCGCcaggaucuacccgAUCGGCGCg -3'
miRNA:   3'- -CGgCGGUag--GCGCCGGCG-------------UGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 22938 0.7 0.3571
Target:  5'- cGCCGCCG-CCGauGCCGUGCCgacgaGGCGg -3'
miRNA:   3'- -CGGCGGUaGGCgcCGGCGUGG-----UCGUg -5'
5249 3' -63 NC_001798.1 + 23250 0.66 0.576974
Target:  5'- uCCGCgGUCCGCgGGgCGUACCcGgACc -3'
miRNA:   3'- cGGCGgUAGGCG-CCgGCGUGGuCgUG- -5'
5249 3' -63 NC_001798.1 + 23338 0.7 0.380319
Target:  5'- aCCGCCG-CCgGCGcGCCcccCGCCGGCGCu -3'
miRNA:   3'- cGGCGGUaGG-CGC-CGGc--GUGGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.