miRNA display CGI


Results 61 - 80 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 23485 0.7 0.349584
Target:  5'- -aCGCCGcCCGCGcCCcCGCCAGCGCc -3'
miRNA:   3'- cgGCGGUaGGCGCcGGcGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 23661 0.7 0.380319
Target:  5'- cGCCGCCGggccCgCGCGGCgGUgGCCGGcCGCg -3'
miRNA:   3'- -CGGCGGUa---G-GCGCCGgCG-UGGUC-GUG- -5'
5249 3' -63 NC_001798.1 + 23979 0.67 0.537559
Target:  5'- -aCGCCcugAUCaCGCGGCUGCuguacacGCCGGaCGCg -3'
miRNA:   3'- cgGCGG---UAG-GCGCCGGCG-------UGGUC-GUG- -5'
5249 3' -63 NC_001798.1 + 24405 0.74 0.217867
Target:  5'- cGuuGCCGUCgGCGGCgGCgucGCCGGC-Cg -3'
miRNA:   3'- -CggCGGUAGgCGCCGgCG---UGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 24499 0.67 0.510247
Target:  5'- cGCCGCgc-CCGCcuCCGCGCCGGC-Cg -3'
miRNA:   3'- -CGGCGguaGGCGccGGCGUGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 24553 0.69 0.421196
Target:  5'- cGCCGgCggUgGUGGCgGCGgCCGGCGCg -3'
miRNA:   3'- -CGGCgGuaGgCGCCGgCGU-GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 24613 0.66 0.606218
Target:  5'- gGCCGCCugCCGCGGgauCCuggagGCGCUGGCGg -3'
miRNA:   3'- -CGGCGGuaGGCGCC---GG-----CGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 24722 0.7 0.38828
Target:  5'- cCCGCgGg-CGCGGCCGCcCCGccGCACg -3'
miRNA:   3'- cGGCGgUagGCGCCGGCGuGGU--CGUG- -5'
5249 3' -63 NC_001798.1 + 24783 0.66 0.616011
Target:  5'- aGCUGCgGUUCGUGcGCgaCGCGCUGGUGCu -3'
miRNA:   3'- -CGGCGgUAGGCGC-CG--GCGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 24856 0.71 0.334894
Target:  5'- --gGCCG-CCGUGGCCGC-CguGCGCg -3'
miRNA:   3'- cggCGGUaGGCGCCGGCGuGguCGUG- -5'
5249 3' -63 NC_001798.1 + 24929 0.7 0.380319
Target:  5'- cGCCuGCUGagcUCCGCcGCCGCGCCGcCGCg -3'
miRNA:   3'- -CGG-CGGU---AGGCGcCGGCGUGGUcGUG- -5'
5249 3' -63 NC_001798.1 + 25036 0.7 0.38828
Target:  5'- cCCGCC-UCCGC-GCCGCGggaGGCGCg -3'
miRNA:   3'- cGGCGGuAGGCGcCGGCGUgg-UCGUG- -5'
5249 3' -63 NC_001798.1 + 25077 0.66 0.56729
Target:  5'- cGCCccgGCCAgggcgCCGCcgGGCgGCGCCccGCGCc -3'
miRNA:   3'- -CGG---CGGUa----GGCG--CCGgCGUGGu-CGUG- -5'
5249 3' -63 NC_001798.1 + 25142 0.71 0.327008
Target:  5'- cCCGCC--CCGCGGCCGCcccucccgcggggGCC-GCGCc -3'
miRNA:   3'- cGGCGGuaGGCGCCGGCG-------------UGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 25193 0.84 0.043628
Target:  5'- cGCCGCCG-CCGCGGCCGCcgcGCCccgcGGCGCu -3'
miRNA:   3'- -CGGCGGUaGGCGCCGGCG---UGG----UCGUG- -5'
5249 3' -63 NC_001798.1 + 25270 0.77 0.121544
Target:  5'- cGCCGCCAgccgCCGgGGCCcagccacaCGCCGGCGCc -3'
miRNA:   3'- -CGGCGGUa---GGCgCCGGc-------GUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 25425 0.7 0.383491
Target:  5'- cUCGCUggCCGCGcGCUGCGCCgccccgccccccggcGGCGCg -3'
miRNA:   3'- cGGCGGuaGGCGC-CGGCGUGG---------------UCGUG- -5'
5249 3' -63 NC_001798.1 + 25470 0.67 0.529026
Target:  5'- cGCCGCCuucggcccgCUGCGcgccucgggcccGCUGCGCC-GCGCg -3'
miRNA:   3'- -CGGCGGua-------GGCGC------------CGGCGUGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 25577 0.74 0.196302
Target:  5'- cGCUGCCGggcgaggaccuggCCGCgGGCCGCGCCGGgGg -3'
miRNA:   3'- -CGGCGGUa------------GGCG-CCGGCGUGGUCgUg -5'
5249 3' -63 NC_001798.1 + 25803 0.69 0.421196
Target:  5'- cGCCGUgGaguUCCuGgGGCUGCugGCCGGCGCc -3'
miRNA:   3'- -CGGCGgU---AGG-CgCCGGCG--UGGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.