miRNA display CGI


Results 81 - 100 of 355 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 25885 0.7 0.3571
Target:  5'- cCCGCCGacgggcCCGUGGUcuCGCGgCAGCACg -3'
miRNA:   3'- cGGCGGUa-----GGCGCCG--GCGUgGUCGUG- -5'
5249 3' -63 NC_001798.1 + 26074 0.67 0.548053
Target:  5'- cGCCGCCG-CUGCGccucuGCCGCgggGCCAacGUGCg -3'
miRNA:   3'- -CGGCGGUaGGCGC-----CGGCG---UGGU--CGUG- -5'
5249 3' -63 NC_001798.1 + 26207 0.69 0.421196
Target:  5'- cGCCGCCucgggCGCGGgCGaCGCCAugGCGCc -3'
miRNA:   3'- -CGGCGGuag--GCGCCgGC-GUGGU--CGUG- -5'
5249 3' -63 NC_001798.1 + 26304 0.7 0.380319
Target:  5'- gGCgCGCCG-CUGCGGCCcgucuacgugGCGCUggGGCGCg -3'
miRNA:   3'- -CG-GCGGUaGGCGCCGG----------CGUGG--UCGUG- -5'
5249 3' -63 NC_001798.1 + 26344 0.74 0.212795
Target:  5'- -aCGCCGUgCGCGGCgGC-CCGGCGg -3'
miRNA:   3'- cgGCGGUAgGCGCCGgCGuGGUCGUg -5'
5249 3' -63 NC_001798.1 + 26368 0.71 0.334894
Target:  5'- aGCUGCgCGggCCGCGGCgggaguucugCGCGCgGGCGCu -3'
miRNA:   3'- -CGGCG-GUa-GGCGCCG----------GCGUGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 26485 0.7 0.38828
Target:  5'- gGgCGUCggCCGCgGGCCGCGCgGGgACg -3'
miRNA:   3'- -CgGCGGuaGGCG-CCGGCGUGgUCgUG- -5'
5249 3' -63 NC_001798.1 + 27242 0.67 0.529026
Target:  5'- gGCCGCgGgggaggcggCCGCGGgaCCGCAgCCccguGGCGCg -3'
miRNA:   3'- -CGGCGgUa--------GGCGCC--GGCGU-GG----UCGUG- -5'
5249 3' -63 NC_001798.1 + 27634 0.71 0.306883
Target:  5'- cCCGCCcgCCGCcGCCGCccGCCuucGCGCc -3'
miRNA:   3'- cGGCGGuaGGCGcCGGCG--UGGu--CGUG- -5'
5249 3' -63 NC_001798.1 + 27931 0.79 0.09692
Target:  5'- cGCCGCCGgggucCCGgcgcCGGCCGCGCCccGGCGCu -3'
miRNA:   3'- -CGGCGGUa----GGC----GCCGGCGUGG--UCGUG- -5'
5249 3' -63 NC_001798.1 + 27976 0.66 0.557648
Target:  5'- uGCCGCgccccggcgcucCAgCCGU-GCCGCGCCccGGCGCg -3'
miRNA:   3'- -CGGCG------------GUaGGCGcCGGCGUGG--UCGUG- -5'
5249 3' -63 NC_001798.1 + 28238 0.74 0.202953
Target:  5'- cGCCGCCugccccccgCCGCcGCCGCGCaaggAGCGCg -3'
miRNA:   3'- -CGGCGGua-------GGCGcCGGCGUGg---UCGUG- -5'
5249 3' -63 NC_001798.1 + 28372 0.68 0.482622
Target:  5'- cGUCcCCGcCCGCGGaCGCGCC-GCGCg -3'
miRNA:   3'- -CGGcGGUaGGCGCCgGCGUGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 28813 0.66 0.596444
Target:  5'- uCCGCCG-CCGCGGgcCCGgGCCgucgGGCGg -3'
miRNA:   3'- cGGCGGUaGGCGCC--GGCgUGG----UCGUg -5'
5249 3' -63 NC_001798.1 + 28970 0.72 0.274438
Target:  5'- cCCGCCGcUCCGCccgccccagggGGCgGCGCCGGC-Ca -3'
miRNA:   3'- cGGCGGU-AGGCG-----------CCGgCGUGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 29014 0.69 0.420353
Target:  5'- cGCCGCCGcgcgggcccggacUCCGCcccGGCgaccgcccCGCGCCGGCu- -3'
miRNA:   3'- -CGGCGGU-------------AGGCG---CCG--------GCGUGGUCGug -5'
5249 3' -63 NC_001798.1 + 29738 0.67 0.498191
Target:  5'- gGCCGCCGUCuCGagucuacccuacccCGGCUcauggaaccccgGC-CCGGCACg -3'
miRNA:   3'- -CGGCGGUAG-GC--------------GCCGG------------CGuGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 29817 0.7 0.349584
Target:  5'- aGCgGCCG-CCGCGGCagacCcCCGGCACg -3'
miRNA:   3'- -CGgCGGUaGGCGCCGgc--GuGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 30757 0.68 0.473574
Target:  5'- cCCGCguggaggCCgagGCGGCCGUgcggGCCGGCACg -3'
miRNA:   3'- cGGCGgua----GG---CGCCGGCG----UGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 31463 0.67 0.53851
Target:  5'- cCCGCCGucUCCGC-GCCGC-CCcGCGg -3'
miRNA:   3'- cGGCGGU--AGGCGcCGGCGuGGuCGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.