miRNA display CGI


Results 101 - 120 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 31580 0.71 0.334894
Target:  5'- cGCgCGCCccCgCGCGGCCGuCGCCccGCGCg -3'
miRNA:   3'- -CG-GCGGuaG-GCGCCGGC-GUGGu-CGUG- -5'
5249 3' -63 NC_001798.1 + 31628 0.66 0.595468
Target:  5'- cGCCGCCG-CCGCccCCGUggugucuGCgAGCGCg -3'
miRNA:   3'- -CGGCGGUaGGCGccGGCG-------UGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 31678 0.72 0.280701
Target:  5'- cGCCGCCcgCCGUgccGGUggacgCGCACCGcGCGCc -3'
miRNA:   3'- -CGGCGGuaGGCG---CCG-----GCGUGGU-CGUG- -5'
5249 3' -63 NC_001798.1 + 32046 0.71 0.327719
Target:  5'- gGCCGCUcgccccggcGUCCGCGggcGCCGCGCCcccgucGGCGu -3'
miRNA:   3'- -CGGCGG---------UAGGCGC---CGGCGUGG------UCGUg -5'
5249 3' -63 NC_001798.1 + 32366 0.66 0.616011
Target:  5'- gGCgGCCccgagcCCGgGGcCCGCGacCCGGCGCc -3'
miRNA:   3'- -CGgCGGua----GGCgCC-GGCGU--GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 32575 0.7 0.387479
Target:  5'- gGCCGCgGcccCCGCGuggagccGCCGCACCcugcuccccgAGCACg -3'
miRNA:   3'- -CGGCGgUa--GGCGC-------CGGCGUGG----------UCGUG- -5'
5249 3' -63 NC_001798.1 + 32761 0.67 0.537559
Target:  5'- -gCGCCAcCCGUGGUcucgggagcagggCGCGCCcGCGCc -3'
miRNA:   3'- cgGCGGUaGGCGCCG-------------GCGUGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 34792 0.7 0.349584
Target:  5'- cGCCGCCGg-CGCGGCCcgggGCcCCGGgGCc -3'
miRNA:   3'- -CGGCGGUagGCGCCGG----CGuGGUCgUG- -5'
5249 3' -63 NC_001798.1 + 35448 0.7 0.3571
Target:  5'- gGCCGCUGgcgCCGCGGCCcGUcuGCUGGCccGCg -3'
miRNA:   3'- -CGGCGGUa--GGCGCCGG-CG--UGGUCG--UG- -5'
5249 3' -63 NC_001798.1 + 35586 0.68 0.472674
Target:  5'- cGCUGCUcggCUGCGGCCGCGggcuccgggggcuCC-GCACu -3'
miRNA:   3'- -CGGCGGua-GGCGCCGGCGU-------------GGuCGUG- -5'
5249 3' -63 NC_001798.1 + 35732 0.66 0.576974
Target:  5'- uCCGCCAUCCucccgccCGGCCGC-CCAcucccCGCu -3'
miRNA:   3'- cGGCGGUAGGc------GCCGGCGuGGUc----GUG- -5'
5249 3' -63 NC_001798.1 + 36228 0.72 0.287076
Target:  5'- cGCCGCCGcgcCCGCGuuucuGCCGC-CCGcGCGCu -3'
miRNA:   3'- -CGGCGGUa--GGCGC-----CGGCGuGGU-CGUG- -5'
5249 3' -63 NC_001798.1 + 36995 0.66 0.576974
Target:  5'- cGCCcCCAUacgagagUGUGGCCgGCGCgAGCGCg -3'
miRNA:   3'- -CGGcGGUAg------GCGCCGG-CGUGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 37167 0.71 0.334894
Target:  5'- cGCCGCCuggCG-GGCCGC-UCGGCGCg -3'
miRNA:   3'- -CGGCGGuagGCgCCGGCGuGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 39426 0.66 0.596444
Target:  5'- cGCgGCCGUCCGCGuGCgGgGgggucagggaCAGCGCc -3'
miRNA:   3'- -CGgCGGUAGGCGC-CGgCgUg---------GUCGUG- -5'
5249 3' -63 NC_001798.1 + 39521 0.69 0.438273
Target:  5'- aGCUGCUccccUCCGC-GCCGCGCCucgccguggguGGCGCc -3'
miRNA:   3'- -CGGCGGu---AGGCGcCGGCGUGG-----------UCGUG- -5'
5249 3' -63 NC_001798.1 + 39564 0.66 0.56729
Target:  5'- gGCCGuCCGUCCGCG-CCGaCGCgGGg-- -3'
miRNA:   3'- -CGGC-GGUAGGCGCcGGC-GUGgUCgug -5'
5249 3' -63 NC_001798.1 + 39651 0.67 0.53851
Target:  5'- cGgCGCCG-CCGgGGCCGUAucgaccccggccCCGGCGg -3'
miRNA:   3'- -CgGCGGUaGGCgCCGGCGU------------GGUCGUg -5'
5249 3' -63 NC_001798.1 + 42727 0.67 0.53851
Target:  5'- cGUCGCCAccggCCGagGGcCCGuCGCCcGCACa -3'
miRNA:   3'- -CGGCGGUa---GGCg-CC-GGC-GUGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 42825 0.66 0.600351
Target:  5'- -aCGCgGgCCGCGGgaaacaacagcugaaCCGcCGCCAGCGCc -3'
miRNA:   3'- cgGCGgUaGGCGCC---------------GGC-GUGGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.