miRNA display CGI


Results 21 - 40 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 149243 0.67 0.548053
Target:  5'- cCCGCgGgggcgUCGcCGGCCgGCGCgGGCGCg -3'
miRNA:   3'- cGGCGgUa----GGC-GCCGG-CGUGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 147435 0.68 0.491753
Target:  5'- cGCCGCCcuuugcCCGCGucccaccgagacGCCGCGCC-GCGu -3'
miRNA:   3'- -CGGCGGua----GGCGC------------CGGCGUGGuCGUg -5'
5249 3' -63 NC_001798.1 + 147241 0.72 0.280701
Target:  5'- gGCC-CCGgggccCCG-GGCCGCGCCGGCGg -3'
miRNA:   3'- -CGGcGGUa----GGCgCCGGCGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 147070 0.73 0.2392
Target:  5'- cCCGCaCcUCgGCGGCCGCccccuCCGGCGCc -3'
miRNA:   3'- cGGCG-GuAGgCGCCGGCGu----GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 146860 0.7 0.341448
Target:  5'- cGCCGCCGaucgagagggacUCCGgagaaggaaGGCugcuccgCGCACCGGCGCg -3'
miRNA:   3'- -CGGCGGU------------AGGCg--------CCG-------GCGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 146559 0.68 0.464612
Target:  5'- gGCCGCgGgCCaGCagacgGGCCGCggGCCAGCAg -3'
miRNA:   3'- -CGGCGgUaGG-CG-----CCGGCG--UGGUCGUg -5'
5249 3' -63 NC_001798.1 + 146476 0.72 0.293564
Target:  5'- cGCCGCgGgcUCCGgGGCCGgGCCGGg-- -3'
miRNA:   3'- -CGGCGgU--AGGCgCCGGCgUGGUCgug -5'
5249 3' -63 NC_001798.1 + 146444 0.74 0.207824
Target:  5'- aGCCcCCGgagcCCGCGGCCGCAgCCgAGCAg -3'
miRNA:   3'- -CGGcGGUa---GGCGCCGGCGU-GG-UCGUg -5'
5249 3' -63 NC_001798.1 + 145898 0.7 0.372468
Target:  5'- aCCGCCG-CCGC-GCCcCACCGGCGg -3'
miRNA:   3'- cGGCGGUaGGCGcCGGcGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 145544 0.75 0.180066
Target:  5'- cGCCcgGCCGcCCGC-GUCGCGCCGGCGCc -3'
miRNA:   3'- -CGG--CGGUaGGCGcCGGCGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 145011 0.66 0.576974
Target:  5'- -gCGCCAagaaacaucgUCCGCGGggguCCGCAUgcaaGGCACu -3'
miRNA:   3'- cgGCGGU----------AGGCGCC----GGCGUGg---UCGUG- -5'
5249 3' -63 NC_001798.1 + 144003 0.75 0.184453
Target:  5'- cGCCGCCAgcacguUCCGUagacucGGagGCACCGGCACa -3'
miRNA:   3'- -CGGCGGU------AGGCG------CCggCGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 143943 0.68 0.482622
Target:  5'- aGCCcacuuuuCCAggcagCCGCGGCCGC-UCAuGCGCg -3'
miRNA:   3'- -CGGc------GGUa----GGCGCCGGCGuGGU-CGUG- -5'
5249 3' -63 NC_001798.1 + 142967 0.67 0.509315
Target:  5'- aGCCGcCCAUCCGaGGaCCGCguguaauACUuGCGCg -3'
miRNA:   3'- -CGGC-GGUAGGCgCC-GGCG-------UGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 141123 0.7 0.372468
Target:  5'- cGCCGCCGg-CGCaucggcaaccagGGCCGCcgacACCAGCGa -3'
miRNA:   3'- -CGGCGGUagGCG------------CCGGCG----UGGUCGUg -5'
5249 3' -63 NC_001798.1 + 139312 0.75 0.175772
Target:  5'- cGCCGCC--CCGCGuCCGCaucGCCGGCGCc -3'
miRNA:   3'- -CGGCGGuaGGCGCcGGCG---UGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 139066 0.68 0.446959
Target:  5'- gGCCGCgGgccaccaCGUGGCgGCGCCAGUc- -3'
miRNA:   3'- -CGGCGgUag-----GCGCCGgCGUGGUCGug -5'
5249 3' -63 NC_001798.1 + 138892 0.73 0.250507
Target:  5'- aGCUGgUcgGUCCGCuugGGCCGC-CCGGCGCa -3'
miRNA:   3'- -CGGCgG--UAGGCG---CCGGCGuGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 138733 0.68 0.472674
Target:  5'- gGCCGgCGcgcUCCGCGGCCccgGCgaccgugGCCAGCu- -3'
miRNA:   3'- -CGGCgGU---AGGCGCCGG---CG-------UGGUCGug -5'
5249 3' -63 NC_001798.1 + 138610 0.68 0.482622
Target:  5'- cGCUGCCcgCUGaccgGGUcgCGCACCAGcCACu -3'
miRNA:   3'- -CGGCGGuaGGCg---CCG--GCGUGGUC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.