miRNA display CGI


Results 41 - 60 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 138566 0.66 0.556686
Target:  5'- gGUCGCCgGUCCacaggggGgGGCacaGCACCAGgCACu -3'
miRNA:   3'- -CGGCGG-UAGG-------CgCCGg--CGUGGUC-GUG- -5'
5249 3' -63 NC_001798.1 + 138134 0.67 0.507454
Target:  5'- -aCGCCuggcgaagcugCUGCGGUCGCGCCcccggguccugggGGCGCg -3'
miRNA:   3'- cgGCGGua---------GGCGCCGGCGUGG-------------UCGUG- -5'
5249 3' -63 NC_001798.1 + 137995 0.69 0.41281
Target:  5'- cGCCGCagcUCGCGGUCGCgcGCCuGCAg -3'
miRNA:   3'- -CGGCGguaGGCGCCGGCG--UGGuCGUg -5'
5249 3' -63 NC_001798.1 + 137943 0.74 0.193509
Target:  5'- gGCCGCCcgguccgCCGCGcGCUGCucccgcuCCAGCGCc -3'
miRNA:   3'- -CGGCGGua-----GGCGC-CGGCGu------GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 135771 0.66 0.576004
Target:  5'- gGCgGCCggCCGcCGGCC-CGCCGgaggaggccguguGCGCg -3'
miRNA:   3'- -CGgCGGuaGGC-GCCGGcGUGGU-------------CGUG- -5'
5249 3' -63 NC_001798.1 + 135438 0.75 0.17157
Target:  5'- uUUGCgGUCUGCGGCgGCACCGGgGCu -3'
miRNA:   3'- cGGCGgUAGGCGCCGgCGUGGUCgUG- -5'
5249 3' -63 NC_001798.1 + 135392 0.66 0.616011
Target:  5'- gGCCGCCGUCUGCcuGCagaucgaGCagacgGCCAGCuCg -3'
miRNA:   3'- -CGGCGGUAGGCGc-CGg------CG-----UGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 135063 0.68 0.481714
Target:  5'- gGCCGCCuccugCCcgccuuucgggaaGCGGUCGCGCgguGGCACc -3'
miRNA:   3'- -CGGCGGua---GG-------------CGCCGGCGUGg--UCGUG- -5'
5249 3' -63 NC_001798.1 + 134918 0.72 0.280701
Target:  5'- gGCCGCCG-CCGCcGCCGagUCGGCGCg -3'
miRNA:   3'- -CGGCGGUaGGCGcCGGCguGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 134493 0.73 0.233708
Target:  5'- gGCCGCCAUUCGCGacaGCC-C-CCAGUGCg -3'
miRNA:   3'- -CGGCGGUAGGCGC---CGGcGuGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 134436 0.66 0.56729
Target:  5'- gGCC-CUGUCCGCGcGCgucgccgaGCACCccGGCGCg -3'
miRNA:   3'- -CGGcGGUAGGCGC-CGg-------CGUGG--UCGUG- -5'
5249 3' -63 NC_001798.1 + 134157 0.69 0.404527
Target:  5'- gGCCcccgggGCCGU-CGCGGCCGC-CC-GCGCc -3'
miRNA:   3'- -CGG------CGGUAgGCGCCGGCGuGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 131333 0.68 0.482622
Target:  5'- cGCCGCCcgcgCCcCGGgCGCGacgucggcgcCCGGCGCg -3'
miRNA:   3'- -CGGCGGua--GGcGCCgGCGU----------GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 131070 0.67 0.500962
Target:  5'- -gCGCCcaCCGCggcguacacGGCCGcCGCCAGCAa -3'
miRNA:   3'- cgGCGGuaGGCG---------CCGGC-GUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 131018 0.82 0.059579
Target:  5'- cGCCGCCAggCGacgGGCCGCAuCCAGCGCg -3'
miRNA:   3'- -CGGCGGUagGCg--CCGGCGU-GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 129676 0.66 0.586694
Target:  5'- cGUgGUCAcccgggcgCCGgGGCCccaGUACCGGCGCg -3'
miRNA:   3'- -CGgCGGUa-------GGCgCCGG---CGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 128256 0.66 0.586694
Target:  5'- gGCCGgCAUgguggaCCGCgGGCUcgGCCGGCACc -3'
miRNA:   3'- -CGGCgGUA------GGCG-CCGGcgUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 127728 0.69 0.429685
Target:  5'- gGCUGCuCGUaaaaaUGCGGCCGCcgcaacacCCGGCGCc -3'
miRNA:   3'- -CGGCG-GUAg----GCGCCGGCGu-------GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 127616 0.7 0.38828
Target:  5'- cGCUGCCGcCCGagcugaGGCCGCuGCUGGUGCu -3'
miRNA:   3'- -CGGCGGUaGGCg-----CCGGCG-UGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 126735 0.68 0.491753
Target:  5'- -gCGCUcuUCgCGCGGCCGCACC--CACg -3'
miRNA:   3'- cgGCGGu-AG-GCGCCGGCGUGGucGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.