miRNA display CGI


Results 61 - 80 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 125876 0.68 0.482622
Target:  5'- gGCCGCCAag-GCGGCC-CACUuggaauuggaGGCGCg -3'
miRNA:   3'- -CGGCGGUaggCGCCGGcGUGG----------UCGUG- -5'
5249 3' -63 NC_001798.1 + 125745 0.73 0.258681
Target:  5'- cGCCGCCA--CGCGGCCcuGCGCCGacguuuggccgagacGCACc -3'
miRNA:   3'- -CGGCGGUagGCGCCGG--CGUGGU---------------CGUG- -5'
5249 3' -63 NC_001798.1 + 125296 0.7 0.364728
Target:  5'- gGCgCGCCA-CCGC--CCGCACCAGCuCg -3'
miRNA:   3'- -CG-GCGGUaGGCGccGGCGUGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 124424 0.74 0.193509
Target:  5'- aGCUGCC--CCGCGGUCGCGCgGGC-Cg -3'
miRNA:   3'- -CGGCGGuaGGCGCCGGCGUGgUCGuG- -5'
5249 3' -63 NC_001798.1 + 124350 0.66 0.586694
Target:  5'- -gCGUCAUCCGC--CCG-ACCAGCGCc -3'
miRNA:   3'- cgGCGGUAGGCGccGGCgUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 124287 0.7 0.341448
Target:  5'- cCCGCCGcCCGCgcaucacGGCC-CACCuGCACg -3'
miRNA:   3'- cGGCGGUaGGCG-------CCGGcGUGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 123396 0.7 0.35408
Target:  5'- -aCGCCAggccccccgggagCCGCGGCCcCGCCGGguCa -3'
miRNA:   3'- cgGCGGUa------------GGCGCCGGcGUGGUCguG- -5'
5249 3' -63 NC_001798.1 + 122788 0.66 0.596444
Target:  5'- aCCGCguacgCCcUGGCCGUGCUGGCGCa -3'
miRNA:   3'- cGGCGgua--GGcGCCGGCGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 122629 0.68 0.446959
Target:  5'- gGCCGCgcUCCaagGCGGcCCGCGcaucuuCCAGCGCc -3'
miRNA:   3'- -CGGCGguAGG---CGCC-GGCGU------GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 122463 0.68 0.446959
Target:  5'- aGCUGUCccCCGCGGCC-CAgaCGGCGCu -3'
miRNA:   3'- -CGGCGGuaGGCGCCGGcGUg-GUCGUG- -5'
5249 3' -63 NC_001798.1 + 122382 0.69 0.43741
Target:  5'- cCCGCCccCCGCGGCUGUccuccgaGCUGGcCACg -3'
miRNA:   3'- cGGCGGuaGGCGCCGGCG-------UGGUC-GUG- -5'
5249 3' -63 NC_001798.1 + 122279 0.69 0.395538
Target:  5'- aGCCGUCGcuccaucUCCGUGGuCCuGCGCCAuCACu -3'
miRNA:   3'- -CGGCGGU-------AGGCGCC-GG-CGUGGUcGUG- -5'
5249 3' -63 NC_001798.1 + 121961 0.73 0.223043
Target:  5'- cGCCGCCAcccggUCCGCG--CGCGCCccaAGCACg -3'
miRNA:   3'- -CGGCGGU-----AGGCGCcgGCGUGG---UCGUG- -5'
5249 3' -63 NC_001798.1 + 121616 0.68 0.471775
Target:  5'- cCCGCCAaacacgcgauaCGCGGCCGa--CGGCGCg -3'
miRNA:   3'- cGGCGGUag---------GCGCCGGCgugGUCGUG- -5'
5249 3' -63 NC_001798.1 + 121428 0.68 0.444343
Target:  5'- cCCGUCAUCCcgGCGcacccggaccuccuGCCGCGcguccCCAGCGCg -3'
miRNA:   3'- cGGCGGUAGG--CGC--------------CGGCGU-----GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 121275 0.66 0.557648
Target:  5'- uCCGCCcucGUgCGCGGCCGCcCCgacgguggGGCGg -3'
miRNA:   3'- cGGCGG---UAgGCGCCGGCGuGG--------UCGUg -5'
5249 3' -63 NC_001798.1 + 120343 0.68 0.473574
Target:  5'- -aCGCC--CCGgGGUgcaGCGCCAGCACc -3'
miRNA:   3'- cgGCGGuaGGCgCCGg--CGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 118805 0.66 0.614051
Target:  5'- cGUCGCCugccCCGUGGaccuggggcucaCGCacGCCGGCACc -3'
miRNA:   3'- -CGGCGGua--GGCGCCg-----------GCG--UGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 118658 0.72 0.293564
Target:  5'- uGCCGaCCAUCCGCcGCCa-GCUGGCGCu -3'
miRNA:   3'- -CGGC-GGUAGGCGcCGGcgUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 118609 0.69 0.421196
Target:  5'- cGCC-CCGaugCCGCGG-CGCugCAGCGg -3'
miRNA:   3'- -CGGcGGUa--GGCGCCgGCGugGUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.