miRNA display CGI


Results 81 - 100 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 117560 0.74 0.217867
Target:  5'- -gCGCCcaggugCCGCGG-CGCGCCGGCAUg -3'
miRNA:   3'- cgGCGGua----GGCGCCgGCGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 117467 0.74 0.207824
Target:  5'- cGCUGCUAgacaaCGCGGCCGCcguguACCuGCGCa -3'
miRNA:   3'- -CGGCGGUag---GCGCCGGCG-----UGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 117376 0.71 0.320659
Target:  5'- aCCGCCGU-CGCGGCCacggGCACCGuccGCAa -3'
miRNA:   3'- cGGCGGUAgGCGCCGG----CGUGGU---CGUg -5'
5249 3' -63 NC_001798.1 + 116777 0.69 0.421196
Target:  5'- cGCUGCUGugcUCCGCGGCgccCGaCGCgGGCGCc -3'
miRNA:   3'- -CGGCGGU---AGGCGCCG---GC-GUGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 116437 0.77 0.134262
Target:  5'- cGCCGCCGacgaC-CGGCCGCACCGGC-Cg -3'
miRNA:   3'- -CGGCGGUag--GcGCCGGCGUGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 115891 0.8 0.081109
Target:  5'- aGCCGCCGUCCGCGGggcguucgaggaCCGCAgcuacCCGGCGg -3'
miRNA:   3'- -CGGCGGUAGGCGCC------------GGCGU-----GGUCGUg -5'
5249 3' -63 NC_001798.1 + 115529 0.67 0.519603
Target:  5'- cGUCGCgGcCC-CGGCCgGCcCCGGCGCg -3'
miRNA:   3'- -CGGCGgUaGGcGCCGG-CGuGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 114823 0.78 0.104553
Target:  5'- cGCaGCCGUCCGUGGCCGUGCCccgccugacGCACg -3'
miRNA:   3'- -CGgCGGUAGGCGCCGGCGUGGu--------CGUG- -5'
5249 3' -63 NC_001798.1 + 113628 0.67 0.519603
Target:  5'- aUCGCC-UgCGCGGCCGgCGCCGcCAUg -3'
miRNA:   3'- cGGCGGuAgGCGCCGGC-GUGGUcGUG- -5'
5249 3' -63 NC_001798.1 + 113574 0.66 0.616011
Target:  5'- aCCGCCAgCCaGCuGCUGC-CCcGCACg -3'
miRNA:   3'- cGGCGGUaGG-CGcCGGCGuGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 113378 0.73 0.258681
Target:  5'- aGCCGCCguccucgccuacuauGUCaCGUGGCUgGCACgGGCGCu -3'
miRNA:   3'- -CGGCGG---------------UAG-GCGCCGG-CGUGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 112190 0.8 0.085357
Target:  5'- gGCCGCaCGUcCCGCaGGCCGCGCUGGCGg -3'
miRNA:   3'- -CGGCG-GUA-GGCG-CCGGCGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 111304 0.69 0.435686
Target:  5'- gGCCGuggcgcuggauguaCCGaCCGaCGaGCCGCACgAGCGCg -3'
miRNA:   3'- -CGGC--------------GGUaGGC-GC-CGGCGUGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 111210 0.68 0.473574
Target:  5'- aGCUGCUcggccacgGUCC-CGGCC--GCCAGCGCg -3'
miRNA:   3'- -CGGCGG--------UAGGcGCCGGcgUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 111145 0.72 0.293564
Target:  5'- cGCUGUCGgcCCGCGcGUCGCuccccACCGGCACg -3'
miRNA:   3'- -CGGCGGUa-GGCGC-CGGCG-----UGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 111017 0.66 0.612092
Target:  5'- gGCCGCggccaggCGUCCGUGGCCGgcguacaacaCGCCcaggaacgcgccgaGGUACa -3'
miRNA:   3'- -CGGCG-------GUAGGCGCCGGC----------GUGG--------------UCGUG- -5'
5249 3' -63 NC_001798.1 + 109792 0.73 0.244799
Target:  5'- -aCGCCGaucUCCG-GGCCGCGCUAGC-Ca -3'
miRNA:   3'- cgGCGGU---AGGCgCCGGCGUGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 109674 0.69 0.404527
Target:  5'- gGCCGUCcUCCGgGcGCCGUuccugGCgGGCGCg -3'
miRNA:   3'- -CGGCGGuAGGCgC-CGGCG-----UGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 109434 0.66 0.557648
Target:  5'- gGCgGCCcgCCuGCGGCuggaggCGCGCCucgGGCAUc -3'
miRNA:   3'- -CGgCGGuaGG-CGCCG------GCGUGG---UCGUG- -5'
5249 3' -63 NC_001798.1 + 108681 0.71 0.327719
Target:  5'- cGCCGCCc-CCGgGGCCGCccGCgGGgACa -3'
miRNA:   3'- -CGGCGGuaGGCgCCGGCG--UGgUCgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.