miRNA display CGI


Results 41 - 60 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 92979 0.66 0.616011
Target:  5'- -aCGCCGUggccCgCGCGGCCGCccACCuGGCGu -3'
miRNA:   3'- cgGCGGUA----G-GCGCCGGCG--UGG-UCGUg -5'
5249 3' -63 NC_001798.1 + 135392 0.66 0.616011
Target:  5'- gGCCGCCGUCUGCcuGCagaucgaGCagacgGCCAGCuCg -3'
miRNA:   3'- -CGGCGGUAGGCGc-CGg------CG-----UGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 154478 0.66 0.616011
Target:  5'- gGCCGCUcccCCGCGGgCGcCGCCccuccccccGCGCg -3'
miRNA:   3'- -CGGCGGua-GGCGCCgGC-GUGGu--------CGUG- -5'
5249 3' -63 NC_001798.1 + 82365 0.66 0.616011
Target:  5'- cCCGCCG--CGCGGaCgCGCAUCcGCGCg -3'
miRNA:   3'- cGGCGGUagGCGCC-G-GCGUGGuCGUG- -5'
5249 3' -63 NC_001798.1 + 97796 0.66 0.616011
Target:  5'- cGCCGCgGUgccaacggcuUCGCGGCgCGCGC--GCGCu -3'
miRNA:   3'- -CGGCGgUA----------GGCGCCG-GCGUGguCGUG- -5'
5249 3' -63 NC_001798.1 + 1496 0.66 0.616011
Target:  5'- cGUCGCCcgcgcCCGaggcggcggccCGGCCGU-CCAGCGCc -3'
miRNA:   3'- -CGGCGGua---GGC-----------GCCGGCGuGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 70211 0.66 0.615031
Target:  5'- gGCCGCCcUCCcccucgaGCGaGCCGgCgGgCAGCGCg -3'
miRNA:   3'- -CGGCGGuAGG-------CGC-CGGC-G-UgGUCGUG- -5'
5249 3' -63 NC_001798.1 + 24613 0.66 0.606218
Target:  5'- gGCCGCCugCCGCGGgauCCuggagGCGCUGGCGg -3'
miRNA:   3'- -CGGCGGuaGGCGCC---GG-----CGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 51245 0.66 0.606218
Target:  5'- aGCCaGuCCGUUCGCGGaCGCcgggaCAGCGCc -3'
miRNA:   3'- -CGG-C-GGUAGGCGCCgGCGug---GUCGUG- -5'
5249 3' -63 NC_001798.1 + 96338 0.66 0.606218
Target:  5'- aGgUGCgCGUgCUGCGGCgGCACCuGCGg -3'
miRNA:   3'- -CgGCG-GUA-GGCGCCGgCGUGGuCGUg -5'
5249 3' -63 NC_001798.1 + 2662 0.66 0.606218
Target:  5'- uGCgCGCCucCCGCGGCgCGgagGCgGGCGCg -3'
miRNA:   3'- -CG-GCGGuaGGCGCCG-GCg--UGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 4755 0.66 0.606218
Target:  5'- gGCCGCC--UCGuCGGCaucgGCAUCGGCGg -3'
miRNA:   3'- -CGGCGGuaGGC-GCCGg---CGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 57155 0.66 0.606218
Target:  5'- aGCCGCgGgCUgGCGcCCGgGCCGGCGCc -3'
miRNA:   3'- -CGGCGgUaGG-CGCcGGCgUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 72925 0.66 0.606218
Target:  5'- cGCgCGCUggUCGUGGCgCGCuucGCCAGCuCg -3'
miRNA:   3'- -CG-GCGGuaGGCGCCG-GCG---UGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 75465 0.66 0.606218
Target:  5'- gGCCgGCCcggCCGCGGCCcugcuggacuuCACCcuGCGCa -3'
miRNA:   3'- -CGG-CGGua-GGCGCCGGc----------GUGGu-CGUG- -5'
5249 3' -63 NC_001798.1 + 152229 0.66 0.606218
Target:  5'- uCUGCCG-CgGCGGCCGC-UCGGgGCc -3'
miRNA:   3'- cGGCGGUaGgCGCCGGCGuGGUCgUG- -5'
5249 3' -63 NC_001798.1 + 54538 0.66 0.606218
Target:  5'- cCCGCaCGUCgaCGCGGCCG-ACCGGgGu -3'
miRNA:   3'- cGGCG-GUAG--GCGCCGGCgUGGUCgUg -5'
5249 3' -63 NC_001798.1 + 67095 0.66 0.610134
Target:  5'- gGCCGUCugaccaugacUCCGCGGCCccgacguccuucucgGCGCCgccccuGGCAUc -3'
miRNA:   3'- -CGGCGGu---------AGGCGCCGG---------------CGUGG------UCGUG- -5'
5249 3' -63 NC_001798.1 + 111017 0.66 0.612092
Target:  5'- gGCCGCggccaggCGUCCGUGGCCGgcguacaacaCGCCcaggaacgcgccgaGGUACa -3'
miRNA:   3'- -CGGCG-------GUAGGCGCCGGC----------GUGG--------------UCGUG- -5'
5249 3' -63 NC_001798.1 + 118805 0.66 0.614051
Target:  5'- cGUCGCCugccCCGUGGaccuggggcucaCGCacGCCGGCACc -3'
miRNA:   3'- -CGGCGGua--GGCGCCg-----------GCG--UGGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.