miRNA display CGI


Results 81 - 100 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 31628 0.66 0.595468
Target:  5'- cGCCGCCG-CCGCccCCGUggugucuGCgAGCGCg -3'
miRNA:   3'- -CGGCGGUaGGCGccGGCG-------UGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 86979 0.66 0.593516
Target:  5'- cGCCGUCGcuaCCGCGGCuucuucgccgcccuCGC-CCAGaCGCc -3'
miRNA:   3'- -CGGCGGUa--GGCGCCG--------------GCGuGGUC-GUG- -5'
5249 3' -63 NC_001798.1 + 96825 0.66 0.586694
Target:  5'- cGCCGCC--UgGCGGaCCGCAUCuGUAa -3'
miRNA:   3'- -CGGCGGuaGgCGCC-GGCGUGGuCGUg -5'
5249 3' -63 NC_001798.1 + 124350 0.66 0.586694
Target:  5'- -gCGUCAUCCGC--CCG-ACCAGCGCc -3'
miRNA:   3'- cgGCGGUAGGCGccGGCgUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 99958 0.66 0.586694
Target:  5'- -gCGCCA-CUGCGGgaggCGC-CCAGCGCc -3'
miRNA:   3'- cgGCGGUaGGCGCCg---GCGuGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 75570 0.66 0.586694
Target:  5'- gGCCGCCca-C-CGGCCcCucauCCAGCACg -3'
miRNA:   3'- -CGGCGGuagGcGCCGGcGu---GGUCGUG- -5'
5249 3' -63 NC_001798.1 + 70284 0.66 0.586694
Target:  5'- cGCCGCCA-CgGCGGCguuucUGUugUcgGGCGCg -3'
miRNA:   3'- -CGGCGGUaGgCGCCG-----GCGugG--UCGUG- -5'
5249 3' -63 NC_001798.1 + 48385 0.66 0.596444
Target:  5'- gGCgUGCCG-CCGCGaCCGCACgGGCc- -3'
miRNA:   3'- -CG-GCGGUaGGCGCcGGCGUGgUCGug -5'
5249 3' -63 NC_001798.1 + 51169 0.66 0.596444
Target:  5'- -aCGCgCGUCCGaGGCCcggGCGgCGGCGCc -3'
miRNA:   3'- cgGCG-GUAGGCgCCGG---CGUgGUCGUG- -5'
5249 3' -63 NC_001798.1 + 52946 0.66 0.596444
Target:  5'- cGCCGCCcUCCG-GGC-GCACguguccgggaGGCGCg -3'
miRNA:   3'- -CGGCGGuAGGCgCCGgCGUGg---------UCGUG- -5'
5249 3' -63 NC_001798.1 + 96338 0.66 0.606218
Target:  5'- aGgUGCgCGUgCUGCGGCgGCACCuGCGg -3'
miRNA:   3'- -CgGCG-GUA-GGCGCCGgCGUGGuCGUg -5'
5249 3' -63 NC_001798.1 + 51245 0.66 0.606218
Target:  5'- aGCCaGuCCGUUCGCGGaCGCcgggaCAGCGCc -3'
miRNA:   3'- -CGG-C-GGUAGGCGCCgGCGug---GUCGUG- -5'
5249 3' -63 NC_001798.1 + 24613 0.66 0.606218
Target:  5'- gGCCGCCugCCGCGGgauCCuggagGCGCUGGCGg -3'
miRNA:   3'- -CGGCGGuaGGCGCC---GG-----CGUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 2793 0.66 0.606218
Target:  5'- aGgCGCgGgcUCCGCGGCaGCGCCGGg-- -3'
miRNA:   3'- -CgGCGgU--AGGCGCCGgCGUGGUCgug -5'
5249 3' -63 NC_001798.1 + 42825 0.66 0.600351
Target:  5'- -aCGCgGgCCGCGGgaaacaacagcugaaCCGcCGCCAGCGCc -3'
miRNA:   3'- cgGCGgUaGGCGCC---------------GGC-GUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 149472 0.66 0.596444
Target:  5'- -aCGCgGgggCCGCGGcCCGCAgCAGguCc -3'
miRNA:   3'- cgGCGgUa--GGCGCC-GGCGUgGUCguG- -5'
5249 3' -63 NC_001798.1 + 122788 0.66 0.596444
Target:  5'- aCCGCguacgCCcUGGCCGUGCUGGCGCa -3'
miRNA:   3'- cGGCGgua--GGcGCCGGCGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 94569 0.66 0.596444
Target:  5'- gGCCGCCAaggCGCgGGUCGCcaGCCuccagAGCGCc -3'
miRNA:   3'- -CGGCGGUag-GCG-CCGGCG--UGG-----UCGUG- -5'
5249 3' -63 NC_001798.1 + 80609 0.66 0.596444
Target:  5'- --gGCCAgcaCGUGGCCGUGCUGGC-Cg -3'
miRNA:   3'- cggCGGUag-GCGCCGGCGUGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 65348 0.66 0.596444
Target:  5'- gGCUuCCggUgGUGGCCGCGCUGcGCACg -3'
miRNA:   3'- -CGGcGGuaGgCGCCGGCGUGGU-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.