miRNA display CGI


Results 101 - 120 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 3' -63 NC_001798.1 + 53908 0.66 0.576974
Target:  5'- uGCgCGCCAccuggaCCGCgGGCC-CAgCGGCACc -3'
miRNA:   3'- -CG-GCGGUa-----GGCG-CCGGcGUgGUCGUG- -5'
5249 3' -63 NC_001798.1 + 36995 0.66 0.576974
Target:  5'- cGCCcCCAUacgagagUGUGGCCgGCGCgAGCGCg -3'
miRNA:   3'- -CGGcGGUAg------GCGCCGG-CGUGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 23250 0.66 0.576974
Target:  5'- uCCGCgGUCCGCgGGgCGUACCcGgACc -3'
miRNA:   3'- cGGCGgUAGGCG-CCgGCGUGGuCgUG- -5'
5249 3' -63 NC_001798.1 + 145011 0.66 0.576974
Target:  5'- -gCGCCAagaaacaucgUCCGCGGggguCCGCAUgcaaGGCACu -3'
miRNA:   3'- cgGCGGU----------AGGCGCC----GGCGUGg---UCGUG- -5'
5249 3' -63 NC_001798.1 + 97402 0.66 0.576974
Target:  5'- cGCCGCUG-CUGCGGCgGCucgUCAGCc- -3'
miRNA:   3'- -CGGCGGUaGGCGCCGgCGu--GGUCGug -5'
5249 3' -63 NC_001798.1 + 124350 0.66 0.586694
Target:  5'- -gCGUCAUCCGC--CCG-ACCAGCGCc -3'
miRNA:   3'- cgGCGGUAGGCGccGGCgUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 96825 0.66 0.586694
Target:  5'- cGCCGCC--UgGCGGaCCGCAUCuGUAa -3'
miRNA:   3'- -CGGCGGuaGgCGCC-GGCGUGGuCGUg -5'
5249 3' -63 NC_001798.1 + 149472 0.66 0.596444
Target:  5'- -aCGCgGgggCCGCGGcCCGCAgCAGguCc -3'
miRNA:   3'- cgGCGgUa--GGCGCC-GGCGUgGUCguG- -5'
5249 3' -63 NC_001798.1 + 122788 0.66 0.596444
Target:  5'- aCCGCguacgCCcUGGCCGUGCUGGCGCa -3'
miRNA:   3'- cGGCGgua--GGcGCCGGCGUGGUCGUG- -5'
5249 3' -63 NC_001798.1 + 94569 0.66 0.596444
Target:  5'- gGCCGCCAaggCGCgGGUCGCcaGCCuccagAGCGCc -3'
miRNA:   3'- -CGGCGGUag-GCG-CCGGCG--UGG-----UCGUG- -5'
5249 3' -63 NC_001798.1 + 80609 0.66 0.596444
Target:  5'- --gGCCAgcaCGUGGCCGUGCUGGC-Cg -3'
miRNA:   3'- cggCGGUag-GCGCCGGCGUGGUCGuG- -5'
5249 3' -63 NC_001798.1 + 65348 0.66 0.596444
Target:  5'- gGCUuCCggUgGUGGCCGCGCUGcGCACg -3'
miRNA:   3'- -CGGcGGuaGgCGCCGGCGUGGU-CGUG- -5'
5249 3' -63 NC_001798.1 + 52946 0.66 0.596444
Target:  5'- cGCCGCCcUCCG-GGC-GCACguguccgggaGGCGCg -3'
miRNA:   3'- -CGGCGGuAGGCgCCGgCGUGg---------UCGUG- -5'
5249 3' -63 NC_001798.1 + 51169 0.66 0.596444
Target:  5'- -aCGCgCGUCCGaGGCCcggGCGgCGGCGCc -3'
miRNA:   3'- cgGCG-GUAGGCgCCGG---CGUgGUCGUG- -5'
5249 3' -63 NC_001798.1 + 48385 0.66 0.596444
Target:  5'- gGCgUGCCG-CCGCGaCCGCACgGGCc- -3'
miRNA:   3'- -CG-GCGGUaGGCGCcGGCGUGgUCGug -5'
5249 3' -63 NC_001798.1 + 39426 0.66 0.596444
Target:  5'- cGCgGCCGUCCGCGuGCgGgGgggucagggaCAGCGCc -3'
miRNA:   3'- -CGgCGGUAGGCGC-CGgCgUg---------GUCGUG- -5'
5249 3' -63 NC_001798.1 + 28813 0.66 0.596444
Target:  5'- uCCGCCG-CCGCGGgcCCGgGCCgucgGGCGg -3'
miRNA:   3'- cGGCGGUaGGCGCC--GGCgUGG----UCGUg -5'
5249 3' -63 NC_001798.1 + 74409 0.66 0.595468
Target:  5'- cGCCGgCGgaccugaccgCCGCGGCCcugcaccucuacgGgGCCAGCGa -3'
miRNA:   3'- -CGGCgGUa---------GGCGCCGG-------------CgUGGUCGUg -5'
5249 3' -63 NC_001798.1 + 31628 0.66 0.595468
Target:  5'- cGCCGCCG-CCGCccCCGUggugucuGCgAGCGCg -3'
miRNA:   3'- -CGGCGGUaGGCGccGGCG-------UGgUCGUG- -5'
5249 3' -63 NC_001798.1 + 86979 0.66 0.593516
Target:  5'- cGCCGUCGcuaCCGCGGCuucuucgccgcccuCGC-CCAGaCGCc -3'
miRNA:   3'- -CGGCGGUa--GGCGCCG--------------GCGuGGUC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.