miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 5' -50.1 NC_001798.1 + 31247 0.66 0.993767
Target:  5'- -cGCCCCGuUGCG--GGCGGGGGu-- -3'
miRNA:   3'- uuUGGGGUuACGCauCUGCCUCUuuu -5'
5249 5' -50.1 NC_001798.1 + 11966 0.66 0.993767
Target:  5'- cAGCUCCAggGCGgaUAGGCGGGGc--- -3'
miRNA:   3'- uUUGGGGUuaCGC--AUCUGCCUCuuuu -5'
5249 5' -50.1 NC_001798.1 + 74559 0.66 0.993767
Target:  5'- --uCCCCAG-GgG-GGACGGAGAAGg -3'
miRNA:   3'- uuuGGGGUUaCgCaUCUGCCUCUUUu -5'
5249 5' -50.1 NC_001798.1 + 105089 0.66 0.993083
Target:  5'- cGGCCCCGcggcccgcguacaccAUGUGUAGcagauccACGGGGAGGu -3'
miRNA:   3'- uUUGGGGU---------------UACGCAUC-------UGCCUCUUUu -5'
5249 5' -50.1 NC_001798.1 + 132944 0.66 0.992341
Target:  5'- aGGACCCCGAcacgucccUGuCGgcccaggccgccgAGACGGAGGAGGu -3'
miRNA:   3'- -UUUGGGGUU--------AC-GCa------------UCUGCCUCUUUU- -5'
5249 5' -50.1 NC_001798.1 + 5245 0.66 0.991655
Target:  5'- --uCCUCGggGCGcgcgGGGCGGGGGGAAa -3'
miRNA:   3'- uuuGGGGUuaCGCa---UCUGCCUCUUUU- -5'
5249 5' -50.1 NC_001798.1 + 66354 0.66 0.991655
Target:  5'- aGAACCCCcagGAUGCGauacAGGCGGGcGGAc- -3'
miRNA:   3'- -UUUGGGG---UUACGCa---UCUGCCU-CUUuu -5'
5249 5' -50.1 NC_001798.1 + 97586 0.66 0.990404
Target:  5'- cGGCCCCGAgccagggGCGcagGGGCcGGAGAGc- -3'
miRNA:   3'- uUUGGGGUUa------CGCa--UCUG-CCUCUUuu -5'
5249 5' -50.1 NC_001798.1 + 15595 0.66 0.990404
Target:  5'- cGACUCCAcggAUGCaGUcgcGGGCGGGGAGGc -3'
miRNA:   3'- uUUGGGGU---UACG-CA---UCUGCCUCUUUu -5'
5249 5' -50.1 NC_001798.1 + 27212 0.67 0.989012
Target:  5'- gAAGCCCCcgggGCGgGGcGCGGGGGAGg -3'
miRNA:   3'- -UUUGGGGuua-CGCaUC-UGCCUCUUUu -5'
5249 5' -50.1 NC_001798.1 + 153228 0.67 0.989012
Target:  5'- cGGCCCgGGcccGCGgcGGCGGAGGAc- -3'
miRNA:   3'- uUUGGGgUUa--CGCauCUGCCUCUUuu -5'
5249 5' -50.1 NC_001798.1 + 15330 0.67 0.987467
Target:  5'- aGGGCCCCGGcGCGgUAG-CGGGGGGc- -3'
miRNA:   3'- -UUUGGGGUUaCGC-AUCuGCCUCUUuu -5'
5249 5' -50.1 NC_001798.1 + 229 0.67 0.985759
Target:  5'- -cGCCCCcgcGCGgcaGGACGGGGAc-- -3'
miRNA:   3'- uuUGGGGuuaCGCa--UCUGCCUCUuuu -5'
5249 5' -50.1 NC_001798.1 + 43698 0.67 0.985759
Target:  5'- cGGCCCggaGAUGCGUGGccaggcGCGGGGGGc- -3'
miRNA:   3'- uUUGGGg--UUACGCAUC------UGCCUCUUuu -5'
5249 5' -50.1 NC_001798.1 + 154567 0.67 0.985759
Target:  5'- -cGCCCCcgcGCGgcaGGACGGGGAc-- -3'
miRNA:   3'- uuUGGGGuuaCGCa--UCUGCCUCUuuu -5'
5249 5' -50.1 NC_001798.1 + 20908 0.67 0.985759
Target:  5'- uGAACCCgGggGUGgGGAUGGGGGAGc -3'
miRNA:   3'- -UUUGGGgUuaCGCaUCUGCCUCUUUu -5'
5249 5' -50.1 NC_001798.1 + 30043 0.67 0.983879
Target:  5'- gGAGCCCgAGaGCGggGGACaGGGGggGAg -3'
miRNA:   3'- -UUUGGGgUUaCGCa-UCUG-CCUCuuUU- -5'
5249 5' -50.1 NC_001798.1 + 16990 0.67 0.983879
Target:  5'- cAACUCCGcgGCGcuUGGGCGGAGc--- -3'
miRNA:   3'- uUUGGGGUuaCGC--AUCUGCCUCuuuu -5'
5249 5' -50.1 NC_001798.1 + 23868 0.67 0.981816
Target:  5'- -cGCCCCGGccucugggggGCGcccgAGGCGGAGGAGg -3'
miRNA:   3'- uuUGGGGUUa---------CGCa---UCUGCCUCUUUu -5'
5249 5' -50.1 NC_001798.1 + 74708 0.67 0.981816
Target:  5'- -cGCCCCcccgauGAUGUGUGGGCagcagcccuGGAGggGAc -3'
miRNA:   3'- uuUGGGG------UUACGCAUCUG---------CCUCuuUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.