miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5249 5' -50.1 NC_001798.1 + 58065 1.04 0.016631
Target:  5'- cAAACCCCAAUGCGUAGACGGAGAAAAa -3'
miRNA:   3'- -UUUGGGGUUACGCAUCUGCCUCUUUU- -5'
5249 5' -50.1 NC_001798.1 + 100979 0.87 0.203006
Target:  5'- cGACCCCGGggGCGUGGGCGGGGAGGGg -3'
miRNA:   3'- uUUGGGGUUa-CGCAUCUGCCUCUUUU- -5'
5249 5' -50.1 NC_001798.1 + 152513 0.74 0.778807
Target:  5'- -cGCCCCg--GCGgGGGCGGAGGGAGg -3'
miRNA:   3'- uuUGGGGuuaCGCaUCUGCCUCUUUU- -5'
5249 5' -50.1 NC_001798.1 + 28185 0.73 0.817018
Target:  5'- --cCCCCGA-GCGaGGGCGGGGGGAAg -3'
miRNA:   3'- uuuGGGGUUaCGCaUCUGCCUCUUUU- -5'
5249 5' -50.1 NC_001798.1 + 36269 0.73 0.843717
Target:  5'- uGGACCCCGggGUGggcGGCGGGGggGGg -3'
miRNA:   3'- -UUUGGGGUuaCGCau-CUGCCUCuuUU- -5'
5249 5' -50.1 NC_001798.1 + 49830 0.72 0.852193
Target:  5'- uGAACCUCccgcuggugcgaAGUGCGgcGGCGGAGGAAc -3'
miRNA:   3'- -UUUGGGG------------UUACGCauCUGCCUCUUUu -5'
5249 5' -50.1 NC_001798.1 + 5905 0.72 0.883768
Target:  5'- -cGCCCCGAgGCGggcccGGACGGGGGGc- -3'
miRNA:   3'- uuUGGGGUUaCGCa----UCUGCCUCUUuu -5'
5249 5' -50.1 NC_001798.1 + 86431 0.71 0.911318
Target:  5'- cGGACCCCGAgGCGcagcccggGGACGGGGGc-- -3'
miRNA:   3'- -UUUGGGGUUaCGCa-------UCUGCCUCUuuu -5'
5249 5' -50.1 NC_001798.1 + 27537 0.7 0.929185
Target:  5'- cAGCCCCGcgGCGc--GCGGGGGGAGg -3'
miRNA:   3'- uUUGGGGUuaCGCaucUGCCUCUUUU- -5'
5249 5' -50.1 NC_001798.1 + 89686 0.69 0.949232
Target:  5'- cGGGCCCgGAgGCGUaguAGGCGGGGAu-- -3'
miRNA:   3'- -UUUGGGgUUaCGCA---UCUGCCUCUuuu -5'
5249 5' -50.1 NC_001798.1 + 91105 0.69 0.953581
Target:  5'- uGGACCCCGGUGCGcugcuccGCGGGGGc-- -3'
miRNA:   3'- -UUUGGGGUUACGCauc----UGCCUCUuuu -5'
5249 5' -50.1 NC_001798.1 + 101975 0.69 0.953581
Target:  5'- gAGGCCCCGggggggcgauGUGCGgcGGCGGcAGAu-- -3'
miRNA:   3'- -UUUGGGGU----------UACGCauCUGCC-UCUuuu -5'
5249 5' -50.1 NC_001798.1 + 29423 0.69 0.957671
Target:  5'- gGGACuCCCAucUGCGUcGGCGGGGGGc- -3'
miRNA:   3'- -UUUG-GGGUu-ACGCAuCUGCCUCUUuu -5'
5249 5' -50.1 NC_001798.1 + 74345 0.69 0.961507
Target:  5'- -cGCCCCAagGUGCGgUGGGCGGGc---- -3'
miRNA:   3'- uuUGGGGU--UACGC-AUCUGCCUcuuuu -5'
5249 5' -50.1 NC_001798.1 + 58566 0.69 0.961507
Target:  5'- --cCUCCGggGCGUaucgGGGCGGGGGAGAc -3'
miRNA:   3'- uuuGGGGUuaCGCA----UCUGCCUCUUUU- -5'
5249 5' -50.1 NC_001798.1 + 101852 0.69 0.965095
Target:  5'- uGggUCCCg--GCGgcGGCGGAGggGGg -3'
miRNA:   3'- -UuuGGGGuuaCGCauCUGCCUCuuUU- -5'
5249 5' -50.1 NC_001798.1 + 44837 0.68 0.971555
Target:  5'- cGAACCCgGAggggGUGgGGugGGGGAAAGc -3'
miRNA:   3'- -UUUGGGgUUa---CGCaUCugCCUCUUUU- -5'
5249 5' -50.1 NC_001798.1 + 97561 0.68 0.971555
Target:  5'- -cGCCCgCGA-GCGaGGACGGGGAGc- -3'
miRNA:   3'- uuUGGG-GUUaCGCaUCUGCCUCUUuu -5'
5249 5' -50.1 NC_001798.1 + 15438 0.68 0.977106
Target:  5'- gGGGCCCCGGaGuCGUgGGGCGGGGGGu- -3'
miRNA:   3'- -UUUGGGGUUaC-GCA-UCUGCCUCUUuu -5'
5249 5' -50.1 NC_001798.1 + 97511 0.68 0.979562
Target:  5'- aGAGCCCCGGgccgccGCGgaggaggggGGGCGGAGGc-- -3'
miRNA:   3'- -UUUGGGGUUa-----CGCa--------UCUGCCUCUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.