Results 41 - 60 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5250 | 3' | -60.4 | NC_001798.1 | + | 7490 | 0.66 | 0.75783 |
Target: 5'- uGCCuagCCCGguccCCUacgCCCCCCUCggcagcccggaCCCCu -3' miRNA: 3'- -CGG---GGGUaaa-GGAa--GGGGGGAG-----------GGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 28231 | 0.66 | 0.75783 |
Target: 5'- cGCCUgCCGccgCCUgCCCCCCgCCgCCg -3' miRNA: 3'- -CGGG-GGUaaaGGAaGGGGGGaGGgGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 30118 | 0.66 | 0.75783 |
Target: 5'- -aCCCC--UUUCUcCCCCCCUUCCg- -3' miRNA: 3'- cgGGGGuaAAGGAaGGGGGGAGGGgg -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 128008 | 0.66 | 0.75783 |
Target: 5'- aCCCCCGaca--UUCCCCUCUCgCCg -3' miRNA: 3'- cGGGGGUaaaggAAGGGGGGAGgGGg -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 132143 | 0.66 | 0.764244 |
Target: 5'- cGCCgCCGggggCCggcgggcggggcgccCCCCCCggacgCCCCCc -3' miRNA: 3'- -CGGgGGUaaa-GGaa-------------GGGGGGa----GGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 148338 | 0.66 | 0.739235 |
Target: 5'- gGUCUCCucUUCCUgcUCCUCCUccuuUCUCCCa -3' miRNA: 3'- -CGGGGGuaAAGGA--AGGGGGG----AGGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 40317 | 0.66 | 0.739235 |
Target: 5'- cUCCCCGUcgggcgUCaccgCCCCCg-CCCCCg -3' miRNA: 3'- cGGGGGUAa-----AGgaa-GGGGGgaGGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 148652 | 0.67 | 0.691377 |
Target: 5'- cGCCCUCccacUCCUgCCCaCCaCCCCCa -3' miRNA: 3'- -CGGGGGuaa-AGGAaGGGgGGaGGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 47400 | 0.67 | 0.706864 |
Target: 5'- gGCCCCCGUggguuacgcaggCCcUCgCUgCUCUCCCg -3' miRNA: 3'- -CGGGGGUAaa----------GGaAGgGGgGAGGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 31948 | 0.67 | 0.710714 |
Target: 5'- cGCCgCCCcgcgCUcgCCCCUCgCCCCCc -3' miRNA: 3'- -CGG-GGGuaaaGGaaGGGGGGaGGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 127099 | 0.67 | 0.714554 |
Target: 5'- uGCCUCCAggagCCggaccucgagUCCCCCCggggguuugggaugCCCgCCg -3' miRNA: 3'- -CGGGGGUaaa-GGa---------AGGGGGGa-------------GGG-GG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 35203 | 0.66 | 0.720294 |
Target: 5'- gGCCCCUgcgUUCgUUgCUgCCgcgCCCCCg -3' miRNA: 3'- -CGGGGGua-AAGgAAgGGgGGa--GGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 62907 | 0.66 | 0.720294 |
Target: 5'- cGCCCCCA--UCC--CCUCCCgaugCCCgaCCu -3' miRNA: 3'- -CGGGGGUaaAGGaaGGGGGGa---GGG--GG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 67117 | 0.66 | 0.720294 |
Target: 5'- gGCCCCgAcgUCCUUCUCggcgCCgCCCCUg -3' miRNA: 3'- -CGGGGgUaaAGGAAGGGg---GGaGGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 80954 | 0.66 | 0.720294 |
Target: 5'- gGCCCCCGUgccuggUCCUcguggacaUCUCCaugaCCCCg -3' miRNA: 3'- -CGGGGGUAa-----AGGA--------AGGGGggagGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 127890 | 0.66 | 0.720294 |
Target: 5'- gGCCCCgGgUUCCcauuggCCCCagagCCCCCc -3' miRNA: 3'- -CGGGGgUaAAGGaa----GGGGgga-GGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 31437 | 0.66 | 0.729804 |
Target: 5'- cCCCCCAUagUCaUCagcgaCUCUCCCCCg -3' miRNA: 3'- cGGGGGUAaaGGaAGgg---GGGAGGGGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 47447 | 0.66 | 0.729804 |
Target: 5'- gGUCUCCc--UCUUUCCCuCCCUCgCCgCCu -3' miRNA: 3'- -CGGGGGuaaAGGAAGGG-GGGAG-GG-GG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 21480 | 0.66 | 0.729804 |
Target: 5'- cCCCCCGg--CCggCCCCCCgggUCaCCg -3' miRNA: 3'- cGGGGGUaaaGGaaGGGGGGa--GGgGG- -5' |
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5250 | 3' | -60.4 | NC_001798.1 | + | 21793 | 0.66 | 0.729804 |
Target: 5'- cGCCCCCcg-UCCgggCCCgCCUCggggcggagCCCg -3' miRNA: 3'- -CGGGGGuaaAGGaa-GGGgGGAG---------GGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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