miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5251 3' -58.4 NC_001798.1 + 17711 0.66 0.832952
Target:  5'- cGCGCCucguggcucgugcugGCGuACCAC-CCCGCCUugAc -3'
miRNA:   3'- uCGUGG---------------UGC-UGGUGuGGGUGGGugUc -5'
5251 3' -58.4 NC_001798.1 + 28524 0.66 0.829661
Target:  5'- cGCcCCucCGACCcccgugucuC-CCCGCCCGCAGg -3'
miRNA:   3'- uCGuGGu-GCUGGu--------GuGGGUGGGUGUC- -5'
5251 3' -58.4 NC_001798.1 + 107223 0.66 0.829661
Target:  5'- uGCcCC-CGACCGCGCCCGgcacgaaccuggUCCugGGu -3'
miRNA:   3'- uCGuGGuGCUGGUGUGGGU------------GGGugUC- -5'
5251 3' -58.4 NC_001798.1 + 111548 0.66 0.829661
Target:  5'- cAGCGCC-CGgucGCCggcguagaACACCCACC-ACAGc -3'
miRNA:   3'- -UCGUGGuGC---UGG--------UGUGGGUGGgUGUC- -5'
5251 3' -58.4 NC_001798.1 + 151891 0.66 0.829661
Target:  5'- -uCACCcCGGCC-C-CCCGCCCGCu- -3'
miRNA:   3'- ucGUGGuGCUGGuGuGGGUGGGUGuc -5'
5251 3' -58.4 NC_001798.1 + 3752 0.66 0.829661
Target:  5'- uGCGCCGCGu---CGCCCagcucgggcGCCCACAc -3'
miRNA:   3'- uCGUGGUGCugguGUGGG---------UGGGUGUc -5'
5251 3' -58.4 NC_001798.1 + 36868 0.66 0.829661
Target:  5'- aGGCACgUugGACUACgACCgACCaCACGa -3'
miRNA:   3'- -UCGUG-GugCUGGUG-UGGgUGG-GUGUc -5'
5251 3' -58.4 NC_001798.1 + 56238 0.66 0.829661
Target:  5'- aAGacaACCgGCGGCCGgGCCCgGCCC-CGGa -3'
miRNA:   3'- -UCg--UGG-UGCUGGUgUGGG-UGGGuGUC- -5'
5251 3' -58.4 NC_001798.1 + 75763 0.66 0.829661
Target:  5'- uGGCuCCugGAgcgcuCgCGCGCCCACCCGa-- -3'
miRNA:   3'- -UCGuGGugCU-----G-GUGUGGGUGGGUguc -5'
5251 3' -58.4 NC_001798.1 + 104146 0.66 0.829661
Target:  5'- cGaCGCCAgUGGCCGC-CCCGCCugggcguccaggCACAGg -3'
miRNA:   3'- uC-GUGGU-GCUGGUGuGGGUGG------------GUGUC- -5'
5251 3' -58.4 NC_001798.1 + 18726 0.66 0.821312
Target:  5'- --gACCaACGAa-ACGCCCugCCGCGGa -3'
miRNA:   3'- ucgUGG-UGCUggUGUGGGugGGUGUC- -5'
5251 3' -58.4 NC_001798.1 + 55957 0.66 0.821312
Target:  5'- --gGCCACGGCCggaACACgaGCCCGCGc -3'
miRNA:   3'- ucgUGGUGCUGG---UGUGggUGGGUGUc -5'
5251 3' -58.4 NC_001798.1 + 100860 0.66 0.821312
Target:  5'- gGGCugCugGuCCugGCCgGCCUggucGCGGc -3'
miRNA:   3'- -UCGugGugCuGGugUGGgUGGG----UGUC- -5'
5251 3' -58.4 NC_001798.1 + 85020 0.66 0.821312
Target:  5'- --gGCCAUGGCgACGUCCGCCC-CGGg -3'
miRNA:   3'- ucgUGGUGCUGgUGUGGGUGGGuGUC- -5'
5251 3' -58.4 NC_001798.1 + 126304 0.66 0.821312
Target:  5'- cGGCGCCGucuCCGgaGCCCGCCC-CGGg -3'
miRNA:   3'- -UCGUGGUgcuGGUg-UGGGUGGGuGUC- -5'
5251 3' -58.4 NC_001798.1 + 128416 0.66 0.821312
Target:  5'- cGGgGCCugACGACCGCcUCCACgCUGCGGu -3'
miRNA:   3'- -UCgUGG--UGCUGGUGuGGGUG-GGUGUC- -5'
5251 3' -58.4 NC_001798.1 + 130454 0.66 0.821312
Target:  5'- gGGCcCC-CGGCCACugCUGCuCCACc- -3'
miRNA:   3'- -UCGuGGuGCUGGUGugGGUG-GGUGuc -5'
5251 3' -58.4 NC_001798.1 + 91432 0.66 0.820468
Target:  5'- -cCACCGCcucACCAgccccccCACCCGCCCACc- -3'
miRNA:   3'- ucGUGGUGc--UGGU-------GUGGGUGGGUGuc -5'
5251 3' -58.4 NC_001798.1 + 7312 0.66 0.818774
Target:  5'- gGGCACCACGuguccCCAgggaGCCCcggguuccccgagaGCCCAgGGa -3'
miRNA:   3'- -UCGUGGUGCu----GGUg---UGGG--------------UGGGUgUC- -5'
5251 3' -58.4 NC_001798.1 + 106105 0.66 0.817925
Target:  5'- cGGCGCCGCGACCGCcgggucugcgguuCCgGCggCACGGc -3'
miRNA:   3'- -UCGUGGUGCUGGUGu------------GGgUGg-GUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.