Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5252 | 3' | -59.9 | NC_001798.1 | + | 27403 | 0.66 | 0.741365 |
Target: 5'- gGUGCgaCUGGcGUCUUCGGGGg-GGCg -3' miRNA: 3'- gUACGg-GACC-CAGAGGUCCCagUCGa -5' |
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5252 | 3' | -59.9 | NC_001798.1 | + | 2378 | 0.66 | 0.712251 |
Target: 5'- --gGCCCgcgGGGcgcaguaggcCUCCAGGG-CGGCg -3' miRNA: 3'- guaCGGGa--CCCa---------GAGGUCCCaGUCGa -5' |
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5252 | 3' | -59.9 | NC_001798.1 | + | 35784 | 0.66 | 0.702403 |
Target: 5'- gGUG-CUUGGGUCUCCuucgucGGG-CGGCg -3' miRNA: 3'- gUACgGGACCCAGAGGu-----CCCaGUCGa -5' |
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5252 | 3' | -59.9 | NC_001798.1 | + | 103483 | 0.66 | 0.692497 |
Target: 5'- cCGUG-UCUGGG--UCCAGGGcCAGCUc -3' miRNA: 3'- -GUACgGGACCCagAGGUCCCaGUCGA- -5' |
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5252 | 3' | -59.9 | NC_001798.1 | + | 129139 | 0.67 | 0.682542 |
Target: 5'- cCGUGgCCUGGaG-CUCCGGGG--AGCUg -3' miRNA: 3'- -GUACgGGACC-CaGAGGUCCCagUCGA- -5' |
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5252 | 3' | -59.9 | NC_001798.1 | + | 122029 | 0.67 | 0.682542 |
Target: 5'- --cGCCCU-GGUCcaCCAGGccGUCAGCg -3' miRNA: 3'- guaCGGGAcCCAGa-GGUCC--CAGUCGa -5' |
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5252 | 3' | -59.9 | NC_001798.1 | + | 76031 | 0.67 | 0.662521 |
Target: 5'- --cGCCCUGGGcCccgaggccaUCCAGGcG-CGGCUg -3' miRNA: 3'- guaCGGGACCCaG---------AGGUCC-CaGUCGA- -5' |
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5252 | 3' | -59.9 | NC_001798.1 | + | 69978 | 0.67 | 0.63233 |
Target: 5'- --cGCCCgGGGUUUCgaAGGGUCcccgGGCg -3' miRNA: 3'- guaCGGGaCCCAGAGg-UCCCAG----UCGa -5' |
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5252 | 3' | -59.9 | NC_001798.1 | + | 27908 | 0.67 | 0.63233 |
Target: 5'- cCAUGuCCCgccgccgGGGUCcccgccgCCGGGGUCccGGCg -3' miRNA: 3'- -GUAC-GGGa------CCCAGa------GGUCCCAG--UCGa -5' |
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5252 | 3' | -59.9 | NC_001798.1 | + | 52324 | 0.68 | 0.622256 |
Target: 5'- -cUGcCCCUGGGcagCcCCGGGGUCguGGCg -3' miRNA: 3'- guAC-GGGACCCa--GaGGUCCCAG--UCGa -5' |
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5252 | 3' | -59.9 | NC_001798.1 | + | 2461 | 0.68 | 0.573131 |
Target: 5'- --cGCCCUgcGGGUCggggcccucggcgggCCGgcGGGUCAGCg -3' miRNA: 3'- guaCGGGA--CCCAGa--------------GGU--CCCAGUCGa -5' |
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5252 | 3' | -59.9 | NC_001798.1 | + | 23561 | 0.68 | 0.572136 |
Target: 5'- gGUGCCCgcgaGGGcC-CCGGGGgCGGCg -3' miRNA: 3'- gUACGGGa---CCCaGaGGUCCCaGUCGa -5' |
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5252 | 3' | -59.9 | NC_001798.1 | + | 70787 | 0.69 | 0.513395 |
Target: 5'- uCGUGCaagaGGGUCUCCGGuucuuggcccuGGUCAGCa -3' miRNA: 3'- -GUACGgga-CCCAGAGGUC-----------CCAGUCGa -5' |
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5252 | 3' | -59.9 | NC_001798.1 | + | 130238 | 0.7 | 0.484948 |
Target: 5'- --aGCCC-GGGUCUCC-GGG-CGGCc -3' miRNA: 3'- guaCGGGaCCCAGAGGuCCCaGUCGa -5' |
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5252 | 3' | -59.9 | NC_001798.1 | + | 123932 | 0.72 | 0.387926 |
Target: 5'- uGUGCCCUGGGUC-CgGGGGccuggUGGCa -3' miRNA: 3'- gUACGGGACCCAGaGgUCCCa----GUCGa -5' |
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5252 | 3' | -59.9 | NC_001798.1 | + | 57081 | 1.07 | 0.001602 |
Target: 5'- aCAUGCCCUGGGUCUCCAGGGUCAGCUc -3' miRNA: 3'- -GUACGGGACCCAGAGGUCCCAGUCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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