miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5253 3' -60.2 NC_001798.1 + 150845 0.66 0.734219
Target:  5'- aGGgGGCGCCG--GUCGgGUCGCggcgGGCu -3'
miRNA:   3'- -CCgUCGUGGCuaCGGCaCGGCGa---CCG- -5'
5253 3' -60.2 NC_001798.1 + 83373 0.66 0.734219
Target:  5'- --aGGCugCGggGCgaaCGUGuuGUUGGCg -3'
miRNA:   3'- ccgUCGugGCuaCG---GCACggCGACCG- -5'
5253 3' -60.2 NC_001798.1 + 154063 0.66 0.734219
Target:  5'- cGGCuggAGCGCCGggGCgCG-GCacgGCUGGa -3'
miRNA:   3'- -CCG---UCGUGGCuaCG-GCaCGg--CGACCg -5'
5253 3' -60.2 NC_001798.1 + 53112 0.66 0.734219
Target:  5'- cGCGGCG-CGAgcuCCcUGCgGCUGGCg -3'
miRNA:   3'- cCGUCGUgGCUac-GGcACGgCGACCG- -5'
5253 3' -60.2 NC_001798.1 + 111139 0.66 0.733266
Target:  5'- gGGCGGCGCUGucgGCCcgcgcGUCGCUccccaccGGCa -3'
miRNA:   3'- -CCGUCGUGGCua-CGGca---CGGCGA-------CCG- -5'
5253 3' -60.2 NC_001798.1 + 104611 0.66 0.733266
Target:  5'- cGGUAGCACC----CCGUGgCGCaccaacgUGGCg -3'
miRNA:   3'- -CCGUCGUGGcuacGGCACgGCG-------ACCG- -5'
5253 3' -60.2 NC_001798.1 + 2627 0.66 0.724653
Target:  5'- cGGCGGCGCCcugGCCGgGgCGg-GGCu -3'
miRNA:   3'- -CCGUCGUGGcuaCGGCaCgGCgaCCG- -5'
5253 3' -60.2 NC_001798.1 + 2974 0.66 0.724653
Target:  5'- cGGCGuGCGgCGGggcgGCCG-GCCcGCgGGCc -3'
miRNA:   3'- -CCGU-CGUgGCUa---CGGCaCGG-CGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 44897 0.66 0.724653
Target:  5'- uGGCGucccuGCuCgGGUGCUGUGCgGUUGGg -3'
miRNA:   3'- -CCGU-----CGuGgCUACGGCACGgCGACCg -5'
5253 3' -60.2 NC_001798.1 + 53546 0.66 0.724653
Target:  5'- gGGCGaCugCGAccccagccUGCaCGUGCUGCUgcGGCc -3'
miRNA:   3'- -CCGUcGugGCU--------ACG-GCACGGCGA--CCG- -5'
5253 3' -60.2 NC_001798.1 + 102894 0.66 0.724653
Target:  5'- -cCGGCGaucCCGGccUGCCGccGCCGCUcGGCc -3'
miRNA:   3'- ccGUCGU---GGCU--ACGGCa-CGGCGA-CCG- -5'
5253 3' -60.2 NC_001798.1 + 104885 0.66 0.724653
Target:  5'- cGGC-GCACuCGAagGCggaauaGUGgCGCUGGCc -3'
miRNA:   3'- -CCGuCGUG-GCUa-CGg-----CACgGCGACCG- -5'
5253 3' -60.2 NC_001798.1 + 118607 0.66 0.724653
Target:  5'- cGC-GCcCCGAUGCCGcGgCGCUGcaGCg -3'
miRNA:   3'- cCGuCGuGGCUACGGCaCgGCGAC--CG- -5'
5253 3' -60.2 NC_001798.1 + 133282 0.66 0.724653
Target:  5'- uGCAGCACCaugGCCGcgUGCCuGCagugggacucgaUGGCc -3'
miRNA:   3'- cCGUCGUGGcuaCGGC--ACGG-CG------------ACCG- -5'
5253 3' -60.2 NC_001798.1 + 1351 0.66 0.724653
Target:  5'- cGCAGCuccGCCGG-GCC--GCCGCgcacGGCg -3'
miRNA:   3'- cCGUCG---UGGCUaCGGcaCGGCGa---CCG- -5'
5253 3' -60.2 NC_001798.1 + 54367 0.66 0.724653
Target:  5'- cGCGGCGuCCGGcccaCCGggggGCCGC-GGCg -3'
miRNA:   3'- cCGUCGU-GGCUac--GGCa---CGGCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 64239 0.66 0.724653
Target:  5'- cGCAGCuugugcagaCGAUGuuGUcGUCGCcGGCg -3'
miRNA:   3'- cCGUCGug-------GCUACggCA-CGGCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 34835 0.66 0.715012
Target:  5'- cGGgGGC-CCGG-GCCG-GaCCGCcgGGCg -3'
miRNA:   3'- -CCgUCGuGGCUaCGGCaC-GGCGa-CCG- -5'
5253 3' -60.2 NC_001798.1 + 29383 0.66 0.715012
Target:  5'- gGGCgGGCACCacucaggGCCGcGCCgGCggGGCg -3'
miRNA:   3'- -CCG-UCGUGGcua----CGGCaCGG-CGa-CCG- -5'
5253 3' -60.2 NC_001798.1 + 2230 0.66 0.715012
Target:  5'- aGGCGcGCAgCGG-GCCGaagGCgGCgGGCg -3'
miRNA:   3'- -CCGU-CGUgGCUaCGGCa--CGgCGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.