miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5253 5' -54.6 NC_001798.1 + 105691 0.66 0.960044
Target:  5'- aGGGAGAgGCGACagACGGGGgcgacaGCGGUc- -3'
miRNA:   3'- -CUCUCU-UGCUG--UGCCUCag----CGCCAcg -5'
5253 5' -54.6 NC_001798.1 + 42156 0.66 0.960044
Target:  5'- uGGAGGACGcggaucuccCGCGGGGcCGCGGa-- -3'
miRNA:   3'- cUCUCUUGCu--------GUGCCUCaGCGCCacg -5'
5253 5' -54.6 NC_001798.1 + 150620 0.66 0.959686
Target:  5'- uGGGGGGcuccuggGCcGCGCGGGGcugucUCGCGGgggGCg -3'
miRNA:   3'- -CUCUCU-------UGcUGUGCCUC-----AGCGCCa--CG- -5'
5253 5' -54.6 NC_001798.1 + 39795 0.66 0.956357
Target:  5'- -cGAGGcGCGACcacacgcCGGuGGUCGCGGgugGCg -3'
miRNA:   3'- cuCUCU-UGCUGu------GCC-UCAGCGCCa--CG- -5'
5253 5' -54.6 NC_001798.1 + 121866 0.66 0.956357
Target:  5'- cGGGAG-GCGACACGGccacCGCGGa-- -3'
miRNA:   3'- -CUCUCuUGCUGUGCCuca-GCGCCacg -5'
5253 5' -54.6 NC_001798.1 + 92330 0.66 0.956357
Target:  5'- ----cGGCGACGCGGAcGUCGCcGUcGCg -3'
miRNA:   3'- cucucUUGCUGUGCCU-CAGCGcCA-CG- -5'
5253 5' -54.6 NC_001798.1 + 78319 0.66 0.956357
Target:  5'- --cGGAAUGACcCGGAGgccacCGCGGaGCu -3'
miRNA:   3'- cucUCUUGCUGuGCCUCa----GCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 146115 0.66 0.956357
Target:  5'- gGGGGGGugGugGCGGcg--GCGGUGg -3'
miRNA:   3'- -CUCUCUugCugUGCCucagCGCCACg -5'
5253 5' -54.6 NC_001798.1 + 2493 0.67 0.934478
Target:  5'- cGGGucAGCGcCGCGGGG-CGCGGcgGCc -3'
miRNA:   3'- -CUCucUUGCuGUGCCUCaGCGCCa-CG- -5'
5253 5' -54.6 NC_001798.1 + 148382 0.67 0.934478
Target:  5'- gGAGGGGcggGCGugGCGGgcaGGUgUGCGG-GCg -3'
miRNA:   3'- -CUCUCU---UGCugUGCC---UCA-GCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 148275 0.67 0.934478
Target:  5'- gGAGGGGcggGCGugGCGGgcaGGUgUGCGG-GCg -3'
miRNA:   3'- -CUCUCU---UGCugUGCC---UCA-GCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 79264 0.67 0.929395
Target:  5'- cGGAGuuCGACGCGGcGGcCGCGGaccugGCc -3'
miRNA:   3'- cUCUCuuGCUGUGCC-UCaGCGCCa----CG- -5'
5253 5' -54.6 NC_001798.1 + 100737 0.67 0.924074
Target:  5'- cGAGGGGAUggggGACuuGGGGcgCGCGGUcgGCa -3'
miRNA:   3'- -CUCUCUUG----CUGugCCUCa-GCGCCA--CG- -5'
5253 5' -54.6 NC_001798.1 + 2673 0.67 0.934478
Target:  5'- -----cGCGGCGCGGAGgcgggCGCGGcgaGCg -3'
miRNA:   3'- cucucuUGCUGUGCCUCa----GCGCCa--CG- -5'
5253 5' -54.6 NC_001798.1 + 5272 0.67 0.934478
Target:  5'- aGGAGGAgGACGCGGAGga--GGaGCg -3'
miRNA:   3'- cUCUCUUgCUGUGCCUCagcgCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 9132 0.67 0.934478
Target:  5'- -cGAGGuggucuGCGGCACGcGGG-CGCGGcGCc -3'
miRNA:   3'- cuCUCU------UGCUGUGC-CUCaGCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 145389 0.67 0.934478
Target:  5'- cGAG-GGGCGACGCGGGGaaagCGCGcccccGCc -3'
miRNA:   3'- -CUCuCUUGCUGUGCCUCa---GCGCca---CG- -5'
5253 5' -54.6 NC_001798.1 + 89692 0.67 0.939323
Target:  5'- cGGAGGcguaguaGGCGgGGAuGUCGCGGUaGCu -3'
miRNA:   3'- cUCUCUug-----CUGUgCCU-CAGCGCCA-CG- -5'
5253 5' -54.6 NC_001798.1 + 36276 0.67 0.939323
Target:  5'- -cGGGGugGGCgGCGGGGg-GgGGUGCc -3'
miRNA:   3'- cuCUCUugCUG-UGCCUCagCgCCACG- -5'
5253 5' -54.6 NC_001798.1 + 52510 0.67 0.918514
Target:  5'- --aGGGACGACGCGGcGGcCGCGcgcgccGUGCu -3'
miRNA:   3'- cucUCUUGCUGUGCC-UCaGCGC------CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.