miRNA display CGI


Results 21 - 40 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5253 5' -54.6 NC_001798.1 + 104588 0.66 0.952445
Target:  5'- cGGGGAACGucGCcCGGGGcCGcCGGUaGCa -3'
miRNA:   3'- cUCUCUUGC--UGuGCCUCaGC-GCCA-CG- -5'
5253 5' -54.6 NC_001798.1 + 70310 0.66 0.948304
Target:  5'- -cGGGcGCGGCggucggcccgGCGGAGgCGCGG-GCg -3'
miRNA:   3'- cuCUCuUGCUG----------UGCCUCaGCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 36069 0.66 0.948304
Target:  5'- cGGAGGcuGCgGGCGCGGGGUagGUGGguggGCg -3'
miRNA:   3'- cUCUCU--UG-CUGUGCCUCAg-CGCCa---CG- -5'
5253 5' -54.6 NC_001798.1 + 36518 0.66 0.943931
Target:  5'- cGGGGGcgcgcGGCGGCcggGCGGGGgcgCGCGGcgGCc -3'
miRNA:   3'- -CUCUC-----UUGCUG---UGCCUCa--GCGCCa-CG- -5'
5253 5' -54.6 NC_001798.1 + 36560 0.66 0.943931
Target:  5'- cGGGGGcgcgcGGCGGCcggGCGGGGgcgCGCGGcgGCc -3'
miRNA:   3'- -CUCUC-----UUGCUG---UGCCUCa--GCGCCa-CG- -5'
5253 5' -54.6 NC_001798.1 + 36602 0.66 0.943931
Target:  5'- cGGGGGcgcgcGGCGGCcggGCGGGGgcgCGCGGcgGCc -3'
miRNA:   3'- -CUCUC-----UUGCUG---UGCCUCa--GCGCCa-CG- -5'
5253 5' -54.6 NC_001798.1 + 99336 0.66 0.943931
Target:  5'- aGGAGGugGACGCGcGGU--CGGUGUa -3'
miRNA:   3'- cUCUCUugCUGUGCcUCAgcGCCACG- -5'
5253 5' -54.6 NC_001798.1 + 150085 0.66 0.943931
Target:  5'- uGGGGGGCGAgGgGcGAG-CGCGGgGCg -3'
miRNA:   3'- cUCUCUUGCUgUgC-CUCaGCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 89692 0.67 0.939323
Target:  5'- cGGAGGcguaguaGGCGgGGAuGUCGCGGUaGCu -3'
miRNA:   3'- cUCUCUug-----CUGUgCCU-CAGCGCCA-CG- -5'
5253 5' -54.6 NC_001798.1 + 36276 0.67 0.939323
Target:  5'- -cGGGGugGGCgGCGGGGg-GgGGUGCc -3'
miRNA:   3'- cuCUCUugCUG-UGCCUCagCgCCACG- -5'
5253 5' -54.6 NC_001798.1 + 54655 0.67 0.939323
Target:  5'- -cGAGcAGCGGC-CGGcAGcCGCGGcGCg -3'
miRNA:   3'- cuCUC-UUGCUGuGCC-UCaGCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 148275 0.67 0.934478
Target:  5'- gGAGGGGcggGCGugGCGGgcaGGUgUGCGG-GCg -3'
miRNA:   3'- -CUCUCU---UGCugUGCC---UCA-GCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 148382 0.67 0.934478
Target:  5'- gGAGGGGcggGCGugGCGGgcaGGUgUGCGG-GCg -3'
miRNA:   3'- -CUCUCU---UGCugUGCC---UCA-GCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 2493 0.67 0.934478
Target:  5'- cGGGucAGCGcCGCGGGG-CGCGGcgGCc -3'
miRNA:   3'- -CUCucUUGCuGUGCCUCaGCGCCa-CG- -5'
5253 5' -54.6 NC_001798.1 + 2673 0.67 0.934478
Target:  5'- -----cGCGGCGCGGAGgcgggCGCGGcgaGCg -3'
miRNA:   3'- cucucuUGCUGUGCCUCa----GCGCCa--CG- -5'
5253 5' -54.6 NC_001798.1 + 5272 0.67 0.934478
Target:  5'- aGGAGGAgGACGCGGAGga--GGaGCg -3'
miRNA:   3'- cUCUCUUgCUGUGCCUCagcgCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 9132 0.67 0.934478
Target:  5'- -cGAGGuggucuGCGGCACGcGGG-CGCGGcGCc -3'
miRNA:   3'- cuCUCU------UGCUGUGC-CUCaGCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 145389 0.67 0.934478
Target:  5'- cGAG-GGGCGACGCGGGGaaagCGCGcccccGCc -3'
miRNA:   3'- -CUCuCUUGCUGUGCCUCa---GCGCca---CG- -5'
5253 5' -54.6 NC_001798.1 + 79264 0.67 0.929395
Target:  5'- cGGAGuuCGACGCGGcGGcCGCGGaccugGCc -3'
miRNA:   3'- cUCUCuuGCUGUGCC-UCaGCGCCa----CG- -5'
5253 5' -54.6 NC_001798.1 + 100737 0.67 0.924074
Target:  5'- cGAGGGGAUggggGACuuGGGGcgCGCGGUcgGCa -3'
miRNA:   3'- -CUCUCUUG----CUGugCCUCa-GCGCCA--CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.