miRNA display CGI


Results 21 - 40 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5255 3' -54.4 NC_001798.1 + 26007 0.66 0.951727
Target:  5'- --gGCCGCguguucgGGCCGGgGGUcuucGCGCGCg -3'
miRNA:   3'- caaUGGCG-------UCGGCUgCUAu---CGCGUGg -5'
5255 3' -54.4 NC_001798.1 + 55739 0.66 0.948368
Target:  5'- -gUGCUugGCGGCCGcACGGgggauaaggguggccGGCGCGCUg -3'
miRNA:   3'- caAUGG--CGUCGGC-UGCUa--------------UCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 87963 0.66 0.947937
Target:  5'- --cACCaGCAGCUuGCGGggcuUGGaCGCGCCu -3'
miRNA:   3'- caaUGG-CGUCGGcUGCU----AUC-GCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 88788 0.66 0.947937
Target:  5'- --gGCCaGCAGCUGAuCGAacuccgcccAGCGCGCg -3'
miRNA:   3'- caaUGG-CGUCGGCU-GCUa--------UCGCGUGg -5'
5255 3' -54.4 NC_001798.1 + 8804 0.66 0.947937
Target:  5'- --gGCCGCGGgguaaagcggcaCCGACGcgcUGGaaCGCACCg -3'
miRNA:   3'- caaUGGCGUC------------GGCUGCu--AUC--GCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 9040 0.66 0.947937
Target:  5'- ---cCCGCAGCCaGCGcacGGCGaGCCa -3'
miRNA:   3'- caauGGCGUCGGcUGCua-UCGCgUGG- -5'
5255 3' -54.4 NC_001798.1 + 36131 0.66 0.947937
Target:  5'- --cGCCGCGaucCCGcCGGUGGgGCGCg -3'
miRNA:   3'- caaUGGCGUc--GGCuGCUAUCgCGUGg -5'
5255 3' -54.4 NC_001798.1 + 48155 0.66 0.947937
Target:  5'- --cGCCGCGGUCgGGCGccUGGCG-GCCa -3'
miRNA:   3'- caaUGGCGUCGG-CUGCu-AUCGCgUGG- -5'
5255 3' -54.4 NC_001798.1 + 54549 0.66 0.947937
Target:  5'- ----aCGCGGCCGAcCGGggucccgAGCccuGCGCCg -3'
miRNA:   3'- caaugGCGUCGGCU-GCUa------UCG---CGUGG- -5'
5255 3' -54.4 NC_001798.1 + 102192 0.66 0.947937
Target:  5'- ---cCCGgaAGCCuGGCGcgcGGCGCGCCg -3'
miRNA:   3'- caauGGCg-UCGG-CUGCua-UCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 122787 0.66 0.947937
Target:  5'- --cACCGCguacgcccuGGCCG-UGcUGGCGCAUCu -3'
miRNA:   3'- caaUGGCG---------UCGGCuGCuAUCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 24176 0.66 0.943502
Target:  5'- --gGCCGCuucGGCUGGgGccUGGCGCACg -3'
miRNA:   3'- caaUGGCG---UCGGCUgCu-AUCGCGUGg -5'
5255 3' -54.4 NC_001798.1 + 25817 0.66 0.943502
Target:  5'- uGggGCUGCuGGCCGGCGccuGCGacCGCCg -3'
miRNA:   3'- -CaaUGGCG-UCGGCUGCuauCGC--GUGG- -5'
5255 3' -54.4 NC_001798.1 + 26277 0.66 0.943502
Target:  5'- --cACCGCGccugcgcgcGCUGGgGccugGGCGCGCCg -3'
miRNA:   3'- caaUGGCGU---------CGGCUgCua--UCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 32033 0.66 0.943502
Target:  5'- --gACCGCGGCC-ACGGgccGCuCGCCc -3'
miRNA:   3'- caaUGGCGUCGGcUGCUau-CGcGUGG- -5'
5255 3' -54.4 NC_001798.1 + 76867 0.66 0.943502
Target:  5'- --gGCCGU-GCUGGCGAcccuGCGgGCCu -3'
miRNA:   3'- caaUGGCGuCGGCUGCUau--CGCgUGG- -5'
5255 3' -54.4 NC_001798.1 + 83013 0.66 0.943502
Target:  5'- --aGCUGCAGCgGACccgcagGGCGCugUu -3'
miRNA:   3'- caaUGGCGUCGgCUGcua---UCGCGugG- -5'
5255 3' -54.4 NC_001798.1 + 92945 0.66 0.943502
Target:  5'- ---cCCGCcGCCGugGcccuGCGUGCCc -3'
miRNA:   3'- caauGGCGuCGGCugCuau-CGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 94328 0.66 0.943502
Target:  5'- --aACCGguGCUG-CGGcGGCGCGUCa -3'
miRNA:   3'- caaUGGCguCGGCuGCUaUCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 5182 0.66 0.943502
Target:  5'- ---cUgGCGGCCGcguCGGUAGCcGCGCUc -3'
miRNA:   3'- caauGgCGUCGGCu--GCUAUCG-CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.