miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5255 5' -59.8 NC_001798.1 + 12393 0.67 0.709699
Target:  5'- -cGGUGCGCgccCCaCGcUCCCGGCCu -3'
miRNA:   3'- cuCCAUGUGau-GGcGCcAGGGCCGGu -5'
5255 5' -59.8 NC_001798.1 + 75435 0.67 0.709699
Target:  5'- cGGGGcccgcacgcaUACGCagGCCGgGGUggccggCCCGGCCGc -3'
miRNA:   3'- -CUCC----------AUGUGa-UGGCgCCA------GGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 117362 0.67 0.699937
Target:  5'- uGGGuGUGgGCUacACCGCcGUCgCGGCCAc -3'
miRNA:   3'- -CUC-CAUgUGA--UGGCGcCAGgGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 147030 0.67 0.690122
Target:  5'- cGGGGcUugGCcGCCGaGGUgcgcCCCGGCCGg -3'
miRNA:   3'- -CUCC-AugUGaUGGCgCCA----GGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 127016 0.67 0.690122
Target:  5'- -cGGUGuCGCUccgGCCgGCcGUCCUGGCCGa -3'
miRNA:   3'- cuCCAU-GUGA---UGG-CGcCAGGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 71411 0.67 0.690122
Target:  5'- gGGGGUGCcCg--CGCGGacgcccCCCGGCCAc -3'
miRNA:   3'- -CUCCAUGuGaugGCGCCa-----GGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 6213 0.67 0.68026
Target:  5'- cAGGUACGgUGacCCGgGGggCCGGCCGg -3'
miRNA:   3'- cUCCAUGUgAU--GGCgCCagGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 23558 0.67 0.68026
Target:  5'- gGGGGUGCccGCgaggGCCccggggGCGGcgcCCCGGCCGa -3'
miRNA:   3'- -CUCCAUG--UGa---UGG------CGCCa--GGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 120166 0.67 0.670361
Target:  5'- aGGGGUACAaUACCGCGccgCCgGGCg- -3'
miRNA:   3'- -CUCCAUGUgAUGGCGCca-GGgCCGgu -5'
5255 5' -59.8 NC_001798.1 + 136985 0.68 0.664407
Target:  5'- cGAGGgggggcacggccagGCugUGCaCGUGGUCCUcguuGGCCGu -3'
miRNA:   3'- -CUCCa-------------UGugAUG-GCGCCAGGG----CCGGU- -5'
5255 5' -59.8 NC_001798.1 + 81527 0.68 0.660433
Target:  5'- --aGUACGC-ACCGCGG-CCCaucgGGCCGg -3'
miRNA:   3'- cucCAUGUGaUGGCGCCaGGG----CCGGU- -5'
5255 5' -59.8 NC_001798.1 + 26540 0.68 0.640519
Target:  5'- gGAGGUgguggGgACcGCCGCGGggCUGGCCAc -3'
miRNA:   3'- -CUCCA-----UgUGaUGGCGCCagGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 59752 0.68 0.640519
Target:  5'- cGGGGUGC-CU-CCGCuuGGuUCCCGGCg- -3'
miRNA:   3'- -CUCCAUGuGAuGGCG--CC-AGGGCCGgu -5'
5255 5' -59.8 NC_001798.1 + 153980 0.68 0.640519
Target:  5'- -cGGcGCGCUcucgACCGCGGuUCCCGaGUCGu -3'
miRNA:   3'- cuCCaUGUGA----UGGCGCC-AGGGC-CGGU- -5'
5255 5' -59.8 NC_001798.1 + 24588 0.68 0.630549
Target:  5'- -cGGgcCGCgugGCCGUGGagugCCUGGCCGc -3'
miRNA:   3'- cuCCauGUGa--UGGCGCCa---GGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 98566 0.69 0.600674
Target:  5'- uGGGG-GCGCUggugGCCGCGGUggcgucggcggcCCCGGCg- -3'
miRNA:   3'- -CUCCaUGUGA----UGGCGCCA------------GGGCCGgu -5'
5255 5' -59.8 NC_001798.1 + 111007 0.69 0.58976
Target:  5'- -cGGUAUGCgugGCCGCGGccaggcgUCCgUGGCCGg -3'
miRNA:   3'- cuCCAUGUGa--UGGCGCC-------AGG-GCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 92260 0.69 0.580856
Target:  5'- uGGGGUACGUguaugGCCGCGccugUCCGGCCGa -3'
miRNA:   3'- -CUCCAUGUGa----UGGCGCca--GGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 28806 0.69 0.580856
Target:  5'- cGGGUccucCGCcGCCGCGGgCCCgGGCCGu -3'
miRNA:   3'- cUCCAu---GUGaUGGCGCCaGGG-CCGGU- -5'
5255 5' -59.8 NC_001798.1 + 115521 0.69 0.570997
Target:  5'- gGGGcGUACG---UCGCGGcCCCGGCCGg -3'
miRNA:   3'- -CUC-CAUGUgauGGCGCCaGGGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.