miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5256 3' -55.8 NC_001798.1 + 139039 0.66 0.91182
Target:  5'- ----aCCUGCgaacCAGCCGCUG-CgGCugGa -3'
miRNA:   3'- cuuaaGGACG----GUCGGCGACaG-CGugC- -5'
5256 3' -55.8 NC_001798.1 + 128156 0.66 0.91182
Target:  5'- ----aCCUGCgCGGCCuGCUG-CGCgGCGu -3'
miRNA:   3'- cuuaaGGACG-GUCGG-CGACaGCG-UGC- -5'
5256 3' -55.8 NC_001798.1 + 75728 0.66 0.91182
Target:  5'- ----cCCcGCCGGCCaauCUGUaCGCACGc -3'
miRNA:   3'- cuuaaGGaCGGUCGGc--GACA-GCGUGC- -5'
5256 3' -55.8 NC_001798.1 + 4593 0.66 0.903808
Target:  5'- aGAAggCgaGCgGGCCGCUucuucuugcgcgccGUCGCGCu -3'
miRNA:   3'- -CUUaaGgaCGgUCGGCGA--------------CAGCGUGc -5'
5256 3' -55.8 NC_001798.1 + 28242 0.66 0.899327
Target:  5'- ----gCCUGCCccccGCCGCcGcCGCGCa -3'
miRNA:   3'- cuuaaGGACGGu---CGGCGaCaGCGUGc -5'
5256 3' -55.8 NC_001798.1 + 1356 0.66 0.892725
Target:  5'- ---cUCC-GCCgGGCCGCcG-CGCACGg -3'
miRNA:   3'- cuuaAGGaCGG-UCGGCGaCaGCGUGC- -5'
5256 3' -55.8 NC_001798.1 + 135761 0.66 0.885891
Target:  5'- cGAAUccUCCggcgGCCGGCCGCcGgccCGC-CGg -3'
miRNA:   3'- -CUUA--AGGa---CGGUCGGCGaCa--GCGuGC- -5'
5256 3' -55.8 NC_001798.1 + 84791 0.66 0.885891
Target:  5'- aGGAgggagGCCAGCCGCUG-CGUccGCGa -3'
miRNA:   3'- -CUUaaggaCGGUCGGCGACaGCG--UGC- -5'
5256 3' -55.8 NC_001798.1 + 133023 0.67 0.878829
Target:  5'- gGAcgUCgC-GCCGGCCGaggugGUCGCGCu -3'
miRNA:   3'- -CUuaAG-GaCGGUCGGCga---CAGCGUGc -5'
5256 3' -55.8 NC_001798.1 + 52869 0.67 0.871544
Target:  5'- ---gUCCgUGCUggGGCCGCggGUCcGCGCGu -3'
miRNA:   3'- cuuaAGG-ACGG--UCGGCGa-CAG-CGUGC- -5'
5256 3' -55.8 NC_001798.1 + 24992 0.67 0.871544
Target:  5'- ----cCCUGCUGGCCGacaccGUCGcCGCGg -3'
miRNA:   3'- cuuaaGGACGGUCGGCga---CAGC-GUGC- -5'
5256 3' -55.8 NC_001798.1 + 92284 0.67 0.86404
Target:  5'- ---gUCCgGCCgaaggccuggAGCUGCUGUCGCuACu -3'
miRNA:   3'- cuuaAGGaCGG----------UCGGCGACAGCG-UGc -5'
5256 3' -55.8 NC_001798.1 + 53587 0.67 0.856324
Target:  5'- ----cCCUGCUcccgaAGCUGCUGgugCGCGCc -3'
miRNA:   3'- cuuaaGGACGG-----UCGGCGACa--GCGUGc -5'
5256 3' -55.8 NC_001798.1 + 56467 0.67 0.851595
Target:  5'- ---aUCCcGCCAGCCGgcagauguacucgguCUGcUCGUACGa -3'
miRNA:   3'- cuuaAGGaCGGUCGGC---------------GAC-AGCGUGC- -5'
5256 3' -55.8 NC_001798.1 + 51932 0.67 0.848402
Target:  5'- uGGGggCCgccGCCGuGCCGCUGcUCaGCGCGg -3'
miRNA:   3'- -CUUaaGGa--CGGU-CGGCGAC-AG-CGUGC- -5'
5256 3' -55.8 NC_001798.1 + 51465 0.68 0.823466
Target:  5'- aGAUUCUcGCgGGCCGCgUGUCGgGCc -3'
miRNA:   3'- cUUAAGGaCGgUCGGCG-ACAGCgUGc -5'
5256 3' -55.8 NC_001798.1 + 134372 0.68 0.805945
Target:  5'- ----gCCcGCCGGCCGCUccUCGCGCc -3'
miRNA:   3'- cuuaaGGaCGGUCGGCGAc-AGCGUGc -5'
5256 3' -55.8 NC_001798.1 + 5179 0.68 0.796941
Target:  5'- ---aUCCUGgCGGCCGCgucgGUagcCGCGCu -3'
miRNA:   3'- cuuaAGGACgGUCGGCGa---CA---GCGUGc -5'
5256 3' -55.8 NC_001798.1 + 124114 0.68 0.787784
Target:  5'- cGAUUCC-GCCAaCgCGCUGUgGCGCGc -3'
miRNA:   3'- cUUAAGGaCGGUcG-GCGACAgCGUGC- -5'
5256 3' -55.8 NC_001798.1 + 3592 0.69 0.740052
Target:  5'- -----gCUGCCggagaugaaggAGCUGCUGUUGCGCGc -3'
miRNA:   3'- cuuaagGACGG-----------UCGGCGACAGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.