miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5256 3' -55.8 NC_001798.1 + 1356 0.66 0.892725
Target:  5'- ---cUCC-GCCgGGCCGCcG-CGCACGg -3'
miRNA:   3'- cuuaAGGaCGG-UCGGCGaCaGCGUGC- -5'
5256 3' -55.8 NC_001798.1 + 3592 0.69 0.740052
Target:  5'- -----gCUGCCggagaugaaggAGCUGCUGUUGCGCGc -3'
miRNA:   3'- cuuaagGACGG-----------UCGGCGACAGCGUGC- -5'
5256 3' -55.8 NC_001798.1 + 4593 0.66 0.903808
Target:  5'- aGAAggCgaGCgGGCCGCUucuucuugcgcgccGUCGCGCu -3'
miRNA:   3'- -CUUaaGgaCGgUCGGCGA--------------CAGCGUGc -5'
5256 3' -55.8 NC_001798.1 + 5179 0.68 0.796941
Target:  5'- ---aUCCUGgCGGCCGCgucgGUagcCGCGCu -3'
miRNA:   3'- cuuaAGGACgGUCGGCGa---CA---GCGUGc -5'
5256 3' -55.8 NC_001798.1 + 24992 0.67 0.871544
Target:  5'- ----cCCUGCUGGCCGacaccGUCGcCGCGg -3'
miRNA:   3'- cuuaaGGACGGUCGGCga---CAGC-GUGC- -5'
5256 3' -55.8 NC_001798.1 + 28242 0.66 0.899327
Target:  5'- ----gCCUGCCccccGCCGCcGcCGCGCa -3'
miRNA:   3'- cuuaaGGACGGu---CGGCGaCaGCGUGc -5'
5256 3' -55.8 NC_001798.1 + 39078 0.7 0.689926
Target:  5'- --uUUCCUGgCgCAGCaCGCaGUCGCGCa -3'
miRNA:   3'- cuuAAGGAC-G-GUCG-GCGaCAGCGUGc -5'
5256 3' -55.8 NC_001798.1 + 51465 0.68 0.823466
Target:  5'- aGAUUCUcGCgGGCCGCgUGUCGgGCc -3'
miRNA:   3'- cUUAAGGaCGgUCGGCG-ACAGCgUGc -5'
5256 3' -55.8 NC_001798.1 + 51932 0.67 0.848402
Target:  5'- uGGGggCCgccGCCGuGCCGCUGcUCaGCGCGg -3'
miRNA:   3'- -CUUaaGGa--CGGU-CGGCGAC-AG-CGUGC- -5'
5256 3' -55.8 NC_001798.1 + 52869 0.67 0.871544
Target:  5'- ---gUCCgUGCUggGGCCGCggGUCcGCGCGu -3'
miRNA:   3'- cuuaAGG-ACGG--UCGGCGa-CAG-CGUGC- -5'
5256 3' -55.8 NC_001798.1 + 53587 0.67 0.856324
Target:  5'- ----cCCUGCUcccgaAGCUGCUGgugCGCGCc -3'
miRNA:   3'- cuuaaGGACGG-----UCGGCGACa--GCGUGc -5'
5256 3' -55.8 NC_001798.1 + 55843 1.09 0.002655
Target:  5'- uGAAUUCCUGCCAGCCGCUGUCGCACGg -3'
miRNA:   3'- -CUUAAGGACGGUCGGCGACAGCGUGC- -5'
5256 3' -55.8 NC_001798.1 + 56467 0.67 0.851595
Target:  5'- ---aUCCcGCCAGCCGgcagauguacucgguCUGcUCGUACGa -3'
miRNA:   3'- cuuaAGGaCGGUCGGC---------------GAC-AGCGUGC- -5'
5256 3' -55.8 NC_001798.1 + 71615 0.7 0.700086
Target:  5'- cGGcgUCCUcaGCCAGaCGCUGgCGCGCa -3'
miRNA:   3'- -CUuaAGGA--CGGUCgGCGACaGCGUGc -5'
5256 3' -55.8 NC_001798.1 + 71819 0.72 0.576851
Target:  5'- ----cCCgGCCAcGCCGCUGUcCGCGCu -3'
miRNA:   3'- cuuaaGGaCGGU-CGGCGACA-GCGUGc -5'
5256 3' -55.8 NC_001798.1 + 75728 0.66 0.91182
Target:  5'- ----cCCcGCCGGCCaauCUGUaCGCACGc -3'
miRNA:   3'- cuuaaGGaCGGUCGGc--GACA-GCGUGC- -5'
5256 3' -55.8 NC_001798.1 + 84791 0.66 0.885891
Target:  5'- aGGAgggagGCCAGCCGCUG-CGUccGCGa -3'
miRNA:   3'- -CUUaaggaCGGUCGGCGACaGCG--UGC- -5'
5256 3' -55.8 NC_001798.1 + 92284 0.67 0.86404
Target:  5'- ---gUCCgGCCgaaggccuggAGCUGCUGUCGCuACu -3'
miRNA:   3'- cuuaAGGaCGG----------UCGGCGACAGCG-UGc -5'
5256 3' -55.8 NC_001798.1 + 94157 0.71 0.659189
Target:  5'- ----aCCacGCCAuGUCGCUGUCGCugGa -3'
miRNA:   3'- cuuaaGGa-CGGU-CGGCGACAGCGugC- -5'
5256 3' -55.8 NC_001798.1 + 94368 0.74 0.477769
Target:  5'- cGggUUCCUGUCGGCgaagaCGCUgacgGUCGCGCu -3'
miRNA:   3'- -CuuAAGGACGGUCG-----GCGA----CAGCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.