miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5256 5' -58.8 NC_001798.1 + 146277 0.65 0.856846
Target:  5'- aCCGCagccgGAGaGGCCGAGcGGGGagugggcggccggGCGGGAg -3'
miRNA:   3'- gGGUG-----CUC-CUGGCUC-CCCCa------------UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 108697 0.66 0.852342
Target:  5'- gCCCGCGGGGAcaCCGAGGcauccgACGAcGAa -3'
miRNA:   3'- -GGGUGCUCCU--GGCUCCccca--UGCU-CU- -5'
5256 5' -58.8 NC_001798.1 + 15397 0.66 0.852342
Target:  5'- gCCCACc-GGAcCCGGGGuugcGGGUcCGGGAg -3'
miRNA:   3'- -GGGUGcuCCU-GGCUCC----CCCAuGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 96971 0.66 0.852342
Target:  5'- gCUgGCGcGGACCGcGGcGGGcgGCGGGGc -3'
miRNA:   3'- -GGgUGCuCCUGGCuCC-CCCa-UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 116307 0.66 0.84469
Target:  5'- gCCAcCGAGacugccggauuGACgCGGGGGGGcACGAGc -3'
miRNA:   3'- gGGU-GCUC-----------CUG-GCUCCCCCaUGCUCu -5'
5256 5' -58.8 NC_001798.1 + 12802 0.66 0.84469
Target:  5'- aUCCucuaaGAGGGCCGAGuccucGGGGUcuuccggaACGAGu -3'
miRNA:   3'- -GGGug---CUCCUGGCUC-----CCCCA--------UGCUCu -5'
5256 5' -58.8 NC_001798.1 + 87773 0.66 0.84469
Target:  5'- gCCACGucGuCCG-GGGGGUGCcacgucucGGGAa -3'
miRNA:   3'- gGGUGCucCuGGCuCCCCCAUG--------CUCU- -5'
5256 5' -58.8 NC_001798.1 + 10583 0.66 0.84469
Target:  5'- gCCCGCGGGGAaCGGGGGacuGUaugcuaugGCGAGc -3'
miRNA:   3'- -GGGUGCUCCUgGCUCCCc--CA--------UGCUCu -5'
5256 5' -58.8 NC_001798.1 + 74511 0.66 0.84469
Target:  5'- cCCUGCGGGGcgagAUCGGGGGGcu-CGGGGc -3'
miRNA:   3'- -GGGUGCUCC----UGGCUCCCCcauGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 131385 0.66 0.843915
Target:  5'- cCCCugGGGGcCCGGcgucccaucGGGGaugacgaGUGCGAGc -3'
miRNA:   3'- -GGGugCUCCuGGCU---------CCCC-------CAUGCUCu -5'
5256 5' -58.8 NC_001798.1 + 30972 0.66 0.836858
Target:  5'- --gGCGGGGGUCGGGcGGGGgucggGCGGGGg -3'
miRNA:   3'- gggUGCUCCUGGCUC-CCCCa----UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 31005 0.66 0.836858
Target:  5'- --gGCGGGGGUCGGGcGGGGgucggGCGGGGg -3'
miRNA:   3'- gggUGCUCCUGGCUC-CCCCa----UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 31038 0.66 0.836858
Target:  5'- --gGCGGGGGUCGGGcGGGGgucggGCGGGGg -3'
miRNA:   3'- gggUGCUCCUGGCUC-CCCCa----UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 35796 0.66 0.836858
Target:  5'- uCCUucguCGGGcGGCgGGGGGGGggcguCGGGAc -3'
miRNA:   3'- -GGGu---GCUC-CUGgCUCCCCCau---GCUCU- -5'
5256 5' -58.8 NC_001798.1 + 101963 0.66 0.836858
Target:  5'- cCCCGgauaGAGGAggccCCGGGGGGGcgaugUGCGGc- -3'
miRNA:   3'- -GGGUg---CUCCU----GGCUCCCCC-----AUGCUcu -5'
5256 5' -58.8 NC_001798.1 + 36252 0.66 0.836858
Target:  5'- gCCCGCGcgcuccuguguGGAccCCGGGGuGGGcgGCGGGGg -3'
miRNA:   3'- -GGGUGCu----------CCU--GGCUCC-CCCa-UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 80523 0.66 0.832077
Target:  5'- gCCugGAGucuggccagacgcucGGCCcggcGGGGGGGcGCGAGGc -3'
miRNA:   3'- gGGugCUC---------------CUGG----CUCCCCCaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 152821 0.66 0.828855
Target:  5'- -aCGCGGGGAgCGAGGGGccGUcCGAa- -3'
miRNA:   3'- ggGUGCUCCUgGCUCCCC--CAuGCUcu -5'
5256 5' -58.8 NC_001798.1 + 150713 0.66 0.828855
Target:  5'- cCCCcCGccGGCCGcAGGGGGaa-GAGAg -3'
miRNA:   3'- -GGGuGCucCUGGC-UCCCCCaugCUCU- -5'
5256 5' -58.8 NC_001798.1 + 27698 0.66 0.828855
Target:  5'- uCCC-CGGGGGaaaaGAGGcGGG-GCGGGAg -3'
miRNA:   3'- -GGGuGCUCCUgg--CUCC-CCCaUGCUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.