Results 21 - 40 of 104 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 87773 | 0.66 | 0.84469 |
Target: 5'- gCCACGucGuCCG-GGGGGUGCcacgucucGGGAa -3' miRNA: 3'- gGGUGCucCuGGCuCCCCCAUG--------CUCU- -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 12802 | 0.66 | 0.84469 |
Target: 5'- aUCCucuaaGAGGGCCGAGuccucGGGGUcuuccggaACGAGu -3' miRNA: 3'- -GGGug---CUCCUGGCUC-----CCCCA--------UGCUCu -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 116307 | 0.66 | 0.84469 |
Target: 5'- gCCAcCGAGacugccggauuGACgCGGGGGGGcACGAGc -3' miRNA: 3'- gGGU-GCUC-----------CUG-GCUCCCCCaUGCUCu -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 131385 | 0.66 | 0.843915 |
Target: 5'- cCCCugGGGGcCCGGcgucccaucGGGGaugacgaGUGCGAGc -3' miRNA: 3'- -GGGugCUCCuGGCU---------CCCC-------CAUGCUCu -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 36252 | 0.66 | 0.836858 |
Target: 5'- gCCCGCGcgcuccuguguGGAccCCGGGGuGGGcgGCGGGGg -3' miRNA: 3'- -GGGUGCu----------CCU--GGCUCC-CCCa-UGCUCU- -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 101963 | 0.66 | 0.836858 |
Target: 5'- cCCCGgauaGAGGAggccCCGGGGGGGcgaugUGCGGc- -3' miRNA: 3'- -GGGUg---CUCCU----GGCUCCCCC-----AUGCUcu -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 35796 | 0.66 | 0.836858 |
Target: 5'- uCCUucguCGGGcGGCgGGGGGGGggcguCGGGAc -3' miRNA: 3'- -GGGu---GCUC-CUGgCUCCCCCau---GCUCU- -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 30016 | 0.67 | 0.777606 |
Target: 5'- cCUCugGGGGGgCGAGGGaGGca-GGGAg -3' miRNA: 3'- -GGGugCUCCUgGCUCCC-CCaugCUCU- -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 77518 | 0.67 | 0.768597 |
Target: 5'- cCUCGCG-GGGCaCGAGGcuGGGUuCGGGGg -3' miRNA: 3'- -GGGUGCuCCUG-GCUCC--CCCAuGCUCU- -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 11225 | 0.67 | 0.768597 |
Target: 5'- cUCUugGGGGGCCGucGGGccacUGCGGGGc -3' miRNA: 3'- -GGGugCUCCUGGCucCCCc---AUGCUCU- -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 6321 | 0.67 | 0.768597 |
Target: 5'- gCCGgGGGGACgGGccGGGGGgACGGGc -3' miRNA: 3'- gGGUgCUCCUGgCU--CCCCCaUGCUCu -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 6295 | 0.67 | 0.768597 |
Target: 5'- gCCGgGGGGACgGGccGGGGGgACGGGc -3' miRNA: 3'- gGGUgCUCCUGgCU--CCCCCaUGCUCu -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 4626 | 0.67 | 0.777606 |
Target: 5'- gUCGCGcu--CCGGGGGGGgcgACGGGAu -3' miRNA: 3'- gGGUGCuccuGGCUCCCCCa--UGCUCU- -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 152516 | 0.67 | 0.778501 |
Target: 5'- cCCgGCGGGGGCgGAGGGaGGgaaucccccccucuCGGGGc -3' miRNA: 3'- -GGgUGCUCCUGgCUCCC-CCau------------GCUCU- -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 48529 | 0.67 | 0.795254 |
Target: 5'- gUgGCGAGGGgCGGGaGGGGcgggagggGCGGGAg -3' miRNA: 3'- gGgUGCUCCUgGCUC-CCCCa-------UGCUCU- -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 100349 | 0.67 | 0.795254 |
Target: 5'- gCCCGCu--GAUCGAGGGGcagcuggGCGAGAa -3' miRNA: 3'- -GGGUGcucCUGGCUCCCCca-----UGCUCU- -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 150415 | 0.67 | 0.795254 |
Target: 5'- aCCACGGGGGCgGcGGcGGcGCGGGGc -3' miRNA: 3'- gGGUGCUCCUGgCuCCcCCaUGCUCU- -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 152065 | 0.67 | 0.79872 |
Target: 5'- gCCCACGGGGGucccCCGAccgcuuaagcgggccGGGGGU-CGGc- -3' miRNA: 3'- -GGGUGCUCCU----GGCU---------------CCCCCAuGCUcu -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 101913 | 0.67 | 0.801306 |
Target: 5'- --aGCG-GGACCGGggguaaccgcaacuGGGGGaUACGAGGg -3' miRNA: 3'- gggUGCuCCUGGCU--------------CCCCC-AUGCUCU- -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 6269 | 0.67 | 0.768597 |
Target: 5'- gCCGgGGGGACgGGccGGGGGgACGGGc -3' miRNA: 3'- gGGUgCUCCUGgCU--CCCCCaUGCUCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home