miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5256 5' -58.8 NC_001798.1 + 55878 0.98 0.011144
Target:  5'- cCCCACGAGGA-CGAGGGGGUACGAGAa -3'
miRNA:   3'- -GGGUGCUCCUgGCUCCCCCAUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 16179 0.83 0.114312
Target:  5'- gCCCGCGGGGACCGGGGGGacgcACGGGc -3'
miRNA:   3'- -GGGUGCUCCUGGCUCCCCca--UGCUCu -5'
5256 5' -58.8 NC_001798.1 + 126602 0.79 0.196483
Target:  5'- gCCCGCagcuucGGGGGCuCGGGGGGGUACGGcGAg -3'
miRNA:   3'- -GGGUG------CUCCUG-GCUCCCCCAUGCU-CU- -5'
5256 5' -58.8 NC_001798.1 + 137444 0.78 0.231905
Target:  5'- cCCCGCGGGGAcgcgcucgcCCGGaaaucggcGGGGGUugGGGAg -3'
miRNA:   3'- -GGGUGCUCCU---------GGCU--------CCCCCAugCUCU- -5'
5256 5' -58.8 NC_001798.1 + 93471 0.77 0.285178
Target:  5'- aCCGCGAGGGCCacguGGugcccGGGUACGAGGg -3'
miRNA:   3'- gGGUGCUCCUGGcu--CC-----CCCAUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 27568 0.75 0.340254
Target:  5'- gCCCGCGGGGGagcggccggcuCCGGGGGaGGgACGGGGa -3'
miRNA:   3'- -GGGUGCUCCU-----------GGCUCCC-CCaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 78915 0.75 0.340254
Target:  5'- uCCCugGAGGagGCCGAGGcGGaGUgggACGAGGu -3'
miRNA:   3'- -GGGugCUCC--UGGCUCC-CC-CA---UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 6224 0.75 0.355174
Target:  5'- aCCCG-GGGGGCCGGccGGGGGgacggGCGGGGg -3'
miRNA:   3'- -GGGUgCUCCUGGCU--CCCCCa----UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 23564 0.75 0.370549
Target:  5'- gCCCGCGAGGGCCccGGGGGcgGCGc-- -3'
miRNA:   3'- -GGGUGCUCCUGGcuCCCCCa-UGCucu -5'
5256 5' -58.8 NC_001798.1 + 10275 0.74 0.386373
Target:  5'- -aCACGAGGGugcgUCGGGGGGGcgACGGGGg -3'
miRNA:   3'- ggGUGCUCCU----GGCUCCCCCa-UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 81266 0.73 0.427826
Target:  5'- aCCCGCG-GGACCuugcGGGGGGGgaugGCG-GAu -3'
miRNA:   3'- -GGGUGCuCCUGG----CUCCCCCa---UGCuCU- -5'
5256 5' -58.8 NC_001798.1 + 33137 0.73 0.471798
Target:  5'- cCCCGCGcaggGGGGCCGgggauGGGGGGgaaGGGAg -3'
miRNA:   3'- -GGGUGC----UCCUGGC-----UCCCCCaugCUCU- -5'
5256 5' -58.8 NC_001798.1 + 6397 0.72 0.480866
Target:  5'- gCCG-GGGGGCCG-GGGGG-ACGGGGg -3'
miRNA:   3'- gGGUgCUCCUGGCuCCCCCaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 97479 0.72 0.490019
Target:  5'- gCCgGCGGcGcGACCGGGGGGGc-CGAGGa -3'
miRNA:   3'- -GGgUGCU-C-CUGGCUCCCCCauGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 30756 0.72 0.490019
Target:  5'- aCCCGCGuGGagGCCGAGGcGGccGUGCGGGc -3'
miRNA:   3'- -GGGUGCuCC--UGGCUCC-CC--CAUGCUCu -5'
5256 5' -58.8 NC_001798.1 + 85807 0.72 0.499252
Target:  5'- gCCUcCGGGGGCgaugaCGGGGGGGgGCGGGGg -3'
miRNA:   3'- -GGGuGCUCCUG-----GCUCCCCCaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 85260 0.72 0.517001
Target:  5'- gCCGCGcGGGGCCGcgcgcgaggcuucGGGGGG-GCGGGGg -3'
miRNA:   3'- gGGUGC-UCCUGGC-------------UCCCCCaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 122108 0.72 0.521715
Target:  5'- cCCgGCGGGGggcgcuuugccaGCCGGGGGGGcccccgggccgcggGCGAGGa -3'
miRNA:   3'- -GGgUGCUCC------------UGGCUCCCCCa-------------UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 30046 0.72 0.527393
Target:  5'- gCCCGagagcgGGGGACaGGGGGGGagACGAGGg -3'
miRNA:   3'- -GGGUg-----CUCCUGgCUCCCCCa-UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 147611 0.71 0.536906
Target:  5'- gCgGCGGGGAgaGGGGGGGgggGCGGGc -3'
miRNA:   3'- gGgUGCUCCUggCUCCCCCa--UGCUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.