miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5256 5' -58.8 NC_001798.1 + 150081 0.71 0.546478
Target:  5'- cCCCugGGGGG-CGAGGGGcGagcGCGGGGc -3'
miRNA:   3'- -GGGugCUCCUgGCUCCCC-Ca--UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 32320 0.71 0.575496
Target:  5'- gCCGCGGGGGCCGAGGaaguGUGCcAGGa -3'
miRNA:   3'- gGGUGCUCCUGGCUCCcc--CAUGcUCU- -5'
5256 5' -58.8 NC_001798.1 + 108627 0.71 0.585251
Target:  5'- uCCCGCGGGGAgaCGAcGGGGcgacCGAGAg -3'
miRNA:   3'- -GGGUGCUCCUg-GCUcCCCCau--GCUCU- -5'
5256 5' -58.8 NC_001798.1 + 142488 0.7 0.595037
Target:  5'- gCCCcCGAGGcGgCGcGGGGGUGCGAu- -3'
miRNA:   3'- -GGGuGCUCC-UgGCuCCCCCAUGCUcu -5'
5256 5' -58.8 NC_001798.1 + 57557 0.7 0.595037
Target:  5'- uUCCGCGGGGACgCgGAGGGGGcgGCa--- -3'
miRNA:   3'- -GGGUGCUCCUG-G-CUCCCCCa-UGcucu -5'
5256 5' -58.8 NC_001798.1 + 149749 0.7 0.604849
Target:  5'- -gCGCGGGGGCCGAGGGaGGUuucuCGu-- -3'
miRNA:   3'- ggGUGCUCCUGGCUCCC-CCAu---GCucu -5'
5256 5' -58.8 NC_001798.1 + 56172 0.7 0.614679
Target:  5'- gCCCG-GGGGACggCGGGGGGGUGgggUGGGGu -3'
miRNA:   3'- -GGGUgCUCCUG--GCUCCCCCAU---GCUCU- -5'
5256 5' -58.8 NC_001798.1 + 83252 0.7 0.614679
Target:  5'- aCCCGcCGAGGACUcacGGGGUGCuGGGGg -3'
miRNA:   3'- -GGGU-GCUCCUGGcucCCCCAUG-CUCU- -5'
5256 5' -58.8 NC_001798.1 + 45425 0.7 0.624521
Target:  5'- gCUugGAGcGACCGAGGccccccccGGGccUACGAGGg -3'
miRNA:   3'- gGGugCUC-CUGGCUCC--------CCC--AUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 22134 0.7 0.624521
Target:  5'- cCCCuuuGGGGCCGGcGGGGGccaACGGGAg -3'
miRNA:   3'- -GGGugcUCCUGGCU-CCCCCa--UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 90098 0.7 0.633384
Target:  5'- cCCCugGAGGcgagaucGCUGAGGuGGGacuCGGGGa -3'
miRNA:   3'- -GGGugCUCC-------UGGCUCC-CCCau-GCUCU- -5'
5256 5' -58.8 NC_001798.1 + 6360 0.7 0.644215
Target:  5'- gCCGgGGGGACgGGccGGGGGgcCGGGGg -3'
miRNA:   3'- gGGUgCUCCUGgCU--CCCCCauGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 144207 0.7 0.644215
Target:  5'- cUCCGCGAGGagGCgCGcgguuAGGGGGUucGCGAGc -3'
miRNA:   3'- -GGGUGCUCC--UG-GC-----UCCCCCA--UGCUCu -5'
5256 5' -58.8 NC_001798.1 + 54378 0.7 0.644215
Target:  5'- gCCCACcgGGGGGCCGcGGcGcGGUcgGCGGGAg -3'
miRNA:   3'- -GGGUG--CUCCUGGCuCC-C-CCA--UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 154356 0.69 0.653069
Target:  5'- cCCC-CGGGGAgucaacccCCGGGGGGGguguuuuUugGGGGg -3'
miRNA:   3'- -GGGuGCUCCU--------GGCUCCCCC-------AugCUCU- -5'
5256 5' -58.8 NC_001798.1 + 18 0.69 0.653069
Target:  5'- cCCC-CGGGGAgucaacccCCGGGGGGGguguuuuUugGGGGg -3'
miRNA:   3'- -GGGuGCUCCU--------GGCUCCCCC-------AugCUCU- -5'
5256 5' -58.8 NC_001798.1 + 150907 0.69 0.654052
Target:  5'- cCCCGCGccGGGGCgcucuuCGGGGGGcGgGCGGGAc -3'
miRNA:   3'- -GGGUGC--UCCUG------GCUCCCC-CaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 9102 0.69 0.654052
Target:  5'- gCCACGGGaaaGGCCGcGGGGGagccgccGCGAGGu -3'
miRNA:   3'- gGGUGCUC---CUGGCuCCCCCa------UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 4074 0.69 0.663873
Target:  5'- gCCCGCGGucGCCGcGGGGGUcCGGGc -3'
miRNA:   3'- -GGGUGCUccUGGCuCCCCCAuGCUCu -5'
5256 5' -58.8 NC_001798.1 + 67493 0.69 0.663873
Target:  5'- gCCGCG-GGGCCGGGGGGaucGCuGGAa -3'
miRNA:   3'- gGGUGCuCCUGGCUCCCCca-UGcUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.