miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5256 5' -58.8 NC_001798.1 + 5893 0.68 0.759476
Target:  5'- uCCCGCGGGcuccgccCCGAGGcGGGcccggACGGGGg -3'
miRNA:   3'- -GGGUGCUCcu-----GGCUCC-CCCa----UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 27384 0.68 0.759476
Target:  5'- gUCUGCGAGGG-CGAGcGGuGGUGCGAc- -3'
miRNA:   3'- -GGGUGCUCCUgGCUC-CC-CCAUGCUcu -5'
5256 5' -58.8 NC_001798.1 + 6588 0.68 0.759476
Target:  5'- gCCGgGGGGACgGGGGGacGGgcCGGGGg -3'
miRNA:   3'- gGGUgCUCCUGgCUCCC--CCauGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 6269 0.67 0.768597
Target:  5'- gCCGgGGGGACgGGccGGGGGgACGGGc -3'
miRNA:   3'- gGGUgCUCCUGgCU--CCCCCaUGCUCu -5'
5256 5' -58.8 NC_001798.1 + 77518 0.67 0.768597
Target:  5'- cCUCGCG-GGGCaCGAGGcuGGGUuCGGGGg -3'
miRNA:   3'- -GGGUGCuCCUG-GCUCC--CCCAuGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 6295 0.67 0.768597
Target:  5'- gCCGgGGGGACgGGccGGGGGgACGGGc -3'
miRNA:   3'- gGGUgCUCCUGgCU--CCCCCaUGCUCu -5'
5256 5' -58.8 NC_001798.1 + 6321 0.67 0.768597
Target:  5'- gCCGgGGGGACgGGccGGGGGgACGGGc -3'
miRNA:   3'- gGGUgCUCCUGgCU--CCCCCaUGCUCu -5'
5256 5' -58.8 NC_001798.1 + 11225 0.67 0.768597
Target:  5'- cUCUugGGGGGCCGucGGGccacUGCGGGGc -3'
miRNA:   3'- -GGGugCUCCUGGCucCCCc---AUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 30016 0.67 0.777606
Target:  5'- cCUCugGGGGGgCGAGGGaGGca-GGGAg -3'
miRNA:   3'- -GGGugCUCCUgGCUCCC-CCaugCUCU- -5'
5256 5' -58.8 NC_001798.1 + 4626 0.67 0.777606
Target:  5'- gUCGCGcu--CCGGGGGGGgcgACGGGAu -3'
miRNA:   3'- gGGUGCuccuGGCUCCCCCa--UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 152516 0.67 0.778501
Target:  5'- cCCgGCGGGGGCgGAGGGaGGgaaucccccccucuCGGGGc -3'
miRNA:   3'- -GGgUGCUCCUGgCUCCC-CCau------------GCUCU- -5'
5256 5' -58.8 NC_001798.1 + 48529 0.67 0.795254
Target:  5'- gUgGCGAGGGgCGGGaGGGGcgggagggGCGGGAg -3'
miRNA:   3'- gGgUGCUCCUgGCUC-CCCCa-------UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 100349 0.67 0.795254
Target:  5'- gCCCGCu--GAUCGAGGGGcagcuggGCGAGAa -3'
miRNA:   3'- -GGGUGcucCUGGCUCCCCca-----UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 150415 0.67 0.795254
Target:  5'- aCCACGGGGGCgGcGGcGGcGCGGGGc -3'
miRNA:   3'- gGGUGCUCCUGgCuCCcCCaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 152065 0.67 0.79872
Target:  5'- gCCCACGGGGGucccCCGAccgcuuaagcgggccGGGGGU-CGGc- -3'
miRNA:   3'- -GGGUGCUCCU----GGCU---------------CCCCCAuGCUcu -5'
5256 5' -58.8 NC_001798.1 + 101913 0.67 0.801306
Target:  5'- --aGCG-GGACCGGggguaaccgcaacuGGGGGaUACGAGGg -3'
miRNA:   3'- gggUGCuCCUGGCU--------------CCCCC-AUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 27124 0.67 0.812357
Target:  5'- cCCCGC-AGGAgCGGGagggaaggcacGGGGcGCGGGAg -3'
miRNA:   3'- -GGGUGcUCCUgGCUC-----------CCCCaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 14276 0.66 0.818203
Target:  5'- cCCCACGAugaGGGggacggcaaagcccCCGgaacggaugaguGGGGGGUGCGuGGg -3'
miRNA:   3'- -GGGUGCU---CCU--------------GGC------------UCCCCCAUGCuCU- -5'
5256 5' -58.8 NC_001798.1 + 35416 0.66 0.820685
Target:  5'- gCCCGCGGGGGCCuaaugcGGcGGGagGCGuGGg -3'
miRNA:   3'- -GGGUGCUCCUGGcu----CC-CCCa-UGCuCU- -5'
5256 5' -58.8 NC_001798.1 + 83203 0.66 0.820685
Target:  5'- aCCACccgggaagGGGGAaaGGGGGGcaACGAGAg -3'
miRNA:   3'- gGGUG--------CUCCUggCUCCCCcaUGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.