Results 21 - 40 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 152821 | 0.66 | 0.828855 |
Target: 5'- -aCGCGGGGAgCGAGGGGccGUcCGAa- -3' miRNA: 3'- ggGUGCUCCUgGCUCCCC--CAuGCUcu -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 43354 | 0.66 | 0.828855 |
Target: 5'- cCCCGCGucGuccCCGGGGGuuguuGGUGCGAa- -3' miRNA: 3'- -GGGUGCucCu--GGCUCCC-----CCAUGCUcu -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 148035 | 0.66 | 0.828045 |
Target: 5'- aCCGCGuGGGCgcgggCGGGGGGGUggugguaguggugGCG-GAa -3' miRNA: 3'- gGGUGCuCCUG-----GCUCCCCCA-------------UGCuCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 35416 | 0.66 | 0.820685 |
Target: 5'- gCCCGCGGGGGCCuaaugcGGcGGGagGCGuGGg -3' miRNA: 3'- -GGGUGCUCCUGGcu----CC-CCCa-UGCuCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 83203 | 0.66 | 0.820685 |
Target: 5'- aCCACccgggaagGGGGAaaGGGGGGcaACGAGAg -3' miRNA: 3'- gGGUG--------CUCCUggCUCCCCcaUGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 100981 | 0.66 | 0.820685 |
Target: 5'- aCCC-CGGGGGCgUGGGcGGGGaGgGGGAg -3' miRNA: 3'- -GGGuGCUCCUG-GCUC-CCCCaUgCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 14276 | 0.66 | 0.818203 |
Target: 5'- cCCCACGAugaGGGggacggcaaagcccCCGgaacggaugaguGGGGGGUGCGuGGg -3' miRNA: 3'- -GGGUGCU---CCU--------------GGC------------UCCCCCAUGCuCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 27124 | 0.67 | 0.812357 |
Target: 5'- cCCCGC-AGGAgCGGGagggaaggcacGGGGcGCGGGAg -3' miRNA: 3'- -GGGUGcUCCUgGCUC-----------CCCCaUGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 101913 | 0.67 | 0.801306 |
Target: 5'- --aGCG-GGACCGGggguaaccgcaacuGGGGGaUACGAGGg -3' miRNA: 3'- gggUGCuCCUGGCU--------------CCCCC-AUGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 152065 | 0.67 | 0.79872 |
Target: 5'- gCCCACGGGGGucccCCGAccgcuuaagcgggccGGGGGU-CGGc- -3' miRNA: 3'- -GGGUGCUCCU----GGCU---------------CCCCCAuGCUcu -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 48529 | 0.67 | 0.795254 |
Target: 5'- gUgGCGAGGGgCGGGaGGGGcgggagggGCGGGAg -3' miRNA: 3'- gGgUGCUCCUgGCUC-CCCCa-------UGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 100349 | 0.67 | 0.795254 |
Target: 5'- gCCCGCu--GAUCGAGGGGcagcuggGCGAGAa -3' miRNA: 3'- -GGGUGcucCUGGCUCCCCca-----UGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 150415 | 0.67 | 0.795254 |
Target: 5'- aCCACGGGGGCgGcGGcGGcGCGGGGc -3' miRNA: 3'- gGGUGCUCCUGgCuCCcCCaUGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 152516 | 0.67 | 0.778501 |
Target: 5'- cCCgGCGGGGGCgGAGGGaGGgaaucccccccucuCGGGGc -3' miRNA: 3'- -GGgUGCUCCUGgCUCCC-CCau------------GCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 4626 | 0.67 | 0.777606 |
Target: 5'- gUCGCGcu--CCGGGGGGGgcgACGGGAu -3' miRNA: 3'- gGGUGCuccuGGCUCCCCCa--UGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 30016 | 0.67 | 0.777606 |
Target: 5'- cCUCugGGGGGgCGAGGGaGGca-GGGAg -3' miRNA: 3'- -GGGugCUCCUgGCUCCC-CCaugCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 11225 | 0.67 | 0.768597 |
Target: 5'- cUCUugGGGGGCCGucGGGccacUGCGGGGc -3' miRNA: 3'- -GGGugCUCCUGGCucCCCc---AUGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 6321 | 0.67 | 0.768597 |
Target: 5'- gCCGgGGGGACgGGccGGGGGgACGGGc -3' miRNA: 3'- gGGUgCUCCUGgCU--CCCCCaUGCUCu -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 6295 | 0.67 | 0.768597 |
Target: 5'- gCCGgGGGGACgGGccGGGGGgACGGGc -3' miRNA: 3'- gGGUgCUCCUGgCU--CCCCCaUGCUCu -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 6269 | 0.67 | 0.768597 |
Target: 5'- gCCGgGGGGACgGGccGGGGGgACGGGc -3' miRNA: 3'- gGGUgCUCCUGgCU--CCCCCaUGCUCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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