miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5256 5' -58.8 NC_001798.1 + 77518 0.67 0.768597
Target:  5'- cCUCGCG-GGGCaCGAGGcuGGGUuCGGGGg -3'
miRNA:   3'- -GGGUGCuCCUG-GCUCC--CCCAuGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 27384 0.68 0.759476
Target:  5'- gUCUGCGAGGG-CGAGcGGuGGUGCGAc- -3'
miRNA:   3'- -GGGUGCUCCUgGCUC-CC-CCAUGCUcu -5'
5256 5' -58.8 NC_001798.1 + 5893 0.68 0.759476
Target:  5'- uCCCGCGGGcuccgccCCGAGGcGGGcccggACGGGGg -3'
miRNA:   3'- -GGGUGCUCcu-----GGCUCC-CCCa----UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 6546 0.68 0.759476
Target:  5'- gCCGgGGGGACgGGGGGacGGgcCGGGGg -3'
miRNA:   3'- gGGUgCUCCUGgCUCCC--CCauGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 6588 0.68 0.759476
Target:  5'- gCCGgGGGGACgGGGGGacGGgcCGGGGg -3'
miRNA:   3'- gGGUgCUCCUGgCUCCC--CCauGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 34134 0.68 0.759476
Target:  5'- aCCCGCGccugcccccccGGGAacgacgaCGGGGGGGggggaaACGGGGg -3'
miRNA:   3'- -GGGUGC-----------UCCUg------GCUCCCCCa-----UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 78119 0.68 0.759476
Target:  5'- aCCACGAGG-CCGuGGGGcGccugGCGGa- -3'
miRNA:   3'- gGGUGCUCCuGGCuCCCC-Ca---UGCUcu -5'
5256 5' -58.8 NC_001798.1 + 92246 0.68 0.759476
Target:  5'- uCCUcCG-GGGCCGAuGGGGUACGuGu -3'
miRNA:   3'- -GGGuGCuCCUGGCUcCCCCAUGCuCu -5'
5256 5' -58.8 NC_001798.1 + 72320 0.68 0.75025
Target:  5'- gCCCugGcGGcCCG-GGGGGUGCugcaGGAg -3'
miRNA:   3'- -GGGugCuCCuGGCuCCCCCAUGc---UCU- -5'
5256 5' -58.8 NC_001798.1 + 22742 0.68 0.75025
Target:  5'- gCCGCG-GGGCCGAGGucgcgauGGcggACGAGGa -3'
miRNA:   3'- gGGUGCuCCUGGCUCCc------CCa--UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 8299 0.68 0.75025
Target:  5'- cUCCugGGGG---GGGGGGG-GCGAGAg -3'
miRNA:   3'- -GGGugCUCCuggCUCCCCCaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 36503 0.68 0.741864
Target:  5'- -aCGCGGGcGGCCGGGcGGGGgcgcgcggcggccggGCGGGGg -3'
miRNA:   3'- ggGUGCUC-CUGGCUC-CCCCa--------------UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 11655 0.68 0.740928
Target:  5'- uCCC-CGGGGGCgGGggucgggucucGGGGGgaggACGGGGg -3'
miRNA:   3'- -GGGuGCUCCUGgCU-----------CCCCCa---UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 101857 0.68 0.731518
Target:  5'- cCCgGCGGcGGCgGAGGGGGgugggcgugUGCGGGGg -3'
miRNA:   3'- -GGgUGCUcCUGgCUCCCCC---------AUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 15178 0.68 0.730572
Target:  5'- gCCGCGAuguucggGGGgUGGGGGGGcugGCGAGc -3'
miRNA:   3'- gGGUGCU-------CCUgGCUCCCCCa--UGCUCu -5'
5256 5' -58.8 NC_001798.1 + 32898 0.68 0.722028
Target:  5'- gCCuCGGGGGCaGGGGGaGGUGgGGGGg -3'
miRNA:   3'- gGGuGCUCCUGgCUCCC-CCAUgCUCU- -5'
5256 5' -58.8 NC_001798.1 + 27185 0.68 0.712467
Target:  5'- gCCGCGGGcGCgGGGGGaGGgGCGGGGg -3'
miRNA:   3'- gGGUGCUCcUGgCUCCC-CCaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 77360 0.68 0.712467
Target:  5'- gCCCugGAGG-CgCGGGGGGccaucgACGAGc -3'
miRNA:   3'- -GGGugCUCCuG-GCUCCCCca----UGCUCu -5'
5256 5' -58.8 NC_001798.1 + 61143 0.68 0.712467
Target:  5'- aCCCucuuUGAGGGCUcgggggaggggGAGGGGGggaaGAGAg -3'
miRNA:   3'- -GGGu---GCUCCUGG-----------CUCCCCCaug-CUCU- -5'
5256 5' -58.8 NC_001798.1 + 30937 0.68 0.712467
Target:  5'- gCgGCGGGGGUCGGGcGGGGggcggGCGGGGg -3'
miRNA:   3'- gGgUGCUCCUGGCUC-CCCCa----UGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.