miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5256 5' -58.8 NC_001798.1 + 18 0.69 0.653069
Target:  5'- cCCC-CGGGGAgucaacccCCGGGGGGGguguuuuUugGGGGg -3'
miRNA:   3'- -GGGuGCUCCU--------GGCUCCCCC-------AugCUCU- -5'
5256 5' -58.8 NC_001798.1 + 4074 0.69 0.663873
Target:  5'- gCCCGCGGucGCCGcGGGGGUcCGGGc -3'
miRNA:   3'- -GGGUGCUccUGGCuCCCCCAuGCUCu -5'
5256 5' -58.8 NC_001798.1 + 4626 0.67 0.777606
Target:  5'- gUCGCGcu--CCGGGGGGGgcgACGGGAu -3'
miRNA:   3'- gGGUGCuccuGGCUCCCCCa--UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 5893 0.68 0.759476
Target:  5'- uCCCGCGGGcuccgccCCGAGGcGGGcccggACGGGGg -3'
miRNA:   3'- -GGGUGCUCcu-----GGCUCC-CCCa----UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 6224 0.75 0.355174
Target:  5'- aCCCG-GGGGGCCGGccGGGGGgacggGCGGGGg -3'
miRNA:   3'- -GGGUgCUCCUGGCU--CCCCCa----UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 6269 0.67 0.768597
Target:  5'- gCCGgGGGGACgGGccGGGGGgACGGGc -3'
miRNA:   3'- gGGUgCUCCUGgCU--CCCCCaUGCUCu -5'
5256 5' -58.8 NC_001798.1 + 6295 0.67 0.768597
Target:  5'- gCCGgGGGGACgGGccGGGGGgACGGGc -3'
miRNA:   3'- gGGUgCUCCUGgCU--CCCCCaUGCUCu -5'
5256 5' -58.8 NC_001798.1 + 6321 0.67 0.768597
Target:  5'- gCCGgGGGGACgGGccGGGGGgACGGGc -3'
miRNA:   3'- gGGUgCUCCUGgCU--CCCCCaUGCUCu -5'
5256 5' -58.8 NC_001798.1 + 6360 0.7 0.644215
Target:  5'- gCCGgGGGGACgGGccGGGGGgcCGGGGg -3'
miRNA:   3'- gGGUgCUCCUGgCU--CCCCCauGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 6397 0.72 0.480866
Target:  5'- gCCG-GGGGGCCG-GGGGG-ACGGGGg -3'
miRNA:   3'- gGGUgCUCCUGGCuCCCCCaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 6546 0.68 0.759476
Target:  5'- gCCGgGGGGACgGGGGGacGGgcCGGGGg -3'
miRNA:   3'- gGGUgCUCCUGgCUCCC--CCauGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 6588 0.68 0.759476
Target:  5'- gCCGgGGGGACgGGGGGacGGgcCGGGGg -3'
miRNA:   3'- gGGUgCUCCUGgCUCCC--CCauGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 8299 0.68 0.75025
Target:  5'- cUCCugGGGG---GGGGGGG-GCGAGAg -3'
miRNA:   3'- -GGGugCUCCuggCUCCCCCaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 9102 0.69 0.654052
Target:  5'- gCCACGGGaaaGGCCGcGGGGGagccgccGCGAGGu -3'
miRNA:   3'- gGGUGCUC---CUGGCuCCCCCa------UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 10275 0.74 0.386373
Target:  5'- -aCACGAGGGugcgUCGGGGGGGcgACGGGGg -3'
miRNA:   3'- ggGUGCUCCU----GGCUCCCCCa-UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 10583 0.66 0.84469
Target:  5'- gCCCGCGGGGAaCGGGGGacuGUaugcuaugGCGAGc -3'
miRNA:   3'- -GGGUGCUCCUgGCUCCCc--CA--------UGCUCu -5'
5256 5' -58.8 NC_001798.1 + 11225 0.67 0.768597
Target:  5'- cUCUugGGGGGCCGucGGGccacUGCGGGGc -3'
miRNA:   3'- -GGGugCUCCUGGCucCCCc---AUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 11655 0.68 0.740928
Target:  5'- uCCC-CGGGGGCgGGggucgggucucGGGGGgaggACGGGGg -3'
miRNA:   3'- -GGGuGCUCCUGgCU-----------CCCCCa---UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 12802 0.66 0.84469
Target:  5'- aUCCucuaaGAGGGCCGAGuccucGGGGUcuuccggaACGAGu -3'
miRNA:   3'- -GGGug---CUCCUGGCUC-----CCCCA--------UGCUCu -5'
5256 5' -58.8 NC_001798.1 + 13024 0.66 0.828855
Target:  5'- gCCUuCGAGGugaggcacgcuGCCGGGGGGaUGCGcAGGg -3'
miRNA:   3'- -GGGuGCUCC-----------UGGCUCCCCcAUGC-UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.