miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5256 5' -58.8 NC_001798.1 + 14276 0.66 0.818203
Target:  5'- cCCCACGAugaGGGggacggcaaagcccCCGgaacggaugaguGGGGGGUGCGuGGg -3'
miRNA:   3'- -GGGUGCU---CCU--------------GGC------------UCCCCCAUGCuCU- -5'
5256 5' -58.8 NC_001798.1 + 15178 0.68 0.730572
Target:  5'- gCCGCGAuguucggGGGgUGGGGGGGcugGCGAGc -3'
miRNA:   3'- gGGUGCU-------CCUgGCUCCCCCa--UGCUCu -5'
5256 5' -58.8 NC_001798.1 + 15223 0.69 0.677581
Target:  5'- gUCCGCGgguccguguGGGugCGucuuuggguccguugGGGGGGUACGGGc -3'
miRNA:   3'- -GGGUGC---------UCCugGC---------------UCCCCCAUGCUCu -5'
5256 5' -58.8 NC_001798.1 + 15397 0.66 0.852342
Target:  5'- gCCCACc-GGAcCCGGGGuugcGGGUcCGGGAg -3'
miRNA:   3'- -GGGUGcuCCU-GGCUCC----CCCAuGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 16179 0.83 0.114312
Target:  5'- gCCCGCGGGGACCGGGGGGacgcACGGGc -3'
miRNA:   3'- -GGGUGCUCCUGGCUCCCCca--UGCUCu -5'
5256 5' -58.8 NC_001798.1 + 22134 0.7 0.624521
Target:  5'- cCCCuuuGGGGCCGGcGGGGGccaACGGGAg -3'
miRNA:   3'- -GGGugcUCCUGGCU-CCCCCa--UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 22742 0.68 0.75025
Target:  5'- gCCGCG-GGGCCGAGGucgcgauGGcggACGAGGa -3'
miRNA:   3'- gGGUGCuCCUGGCUCCc------CCa--UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 23564 0.75 0.370549
Target:  5'- gCCCGCGAGGGCCccGGGGGcgGCGc-- -3'
miRNA:   3'- -GGGUGCUCCUGGcuCCCCCa-UGCucu -5'
5256 5' -58.8 NC_001798.1 + 27124 0.67 0.812357
Target:  5'- cCCCGC-AGGAgCGGGagggaaggcacGGGGcGCGGGAg -3'
miRNA:   3'- -GGGUGcUCCUgGCUC-----------CCCCaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 27185 0.68 0.712467
Target:  5'- gCCGCGGGcGCgGGGGGaGGgGCGGGGg -3'
miRNA:   3'- gGGUGCUCcUGgCUCCC-CCaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 27384 0.68 0.759476
Target:  5'- gUCUGCGAGGG-CGAGcGGuGGUGCGAc- -3'
miRNA:   3'- -GGGUGCUCCUgGCUC-CC-CCAUGCUcu -5'
5256 5' -58.8 NC_001798.1 + 27568 0.75 0.340254
Target:  5'- gCCCGCGGGGGagcggccggcuCCGGGGGaGGgACGGGGa -3'
miRNA:   3'- -GGGUGCUCCU-----------GGCUCCC-CCaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 27698 0.66 0.828855
Target:  5'- uCCC-CGGGGGaaaaGAGGcGGG-GCGGGAg -3'
miRNA:   3'- -GGGuGCUCCUgg--CUCC-CCCaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 29406 0.69 0.683436
Target:  5'- gCCgGCGGGGcGCCGGGGGGacucccaucugcGUcgGCGGGGg -3'
miRNA:   3'- -GGgUGCUCC-UGGCUCCCC------------CA--UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 30016 0.67 0.777606
Target:  5'- cCUCugGGGGGgCGAGGGaGGca-GGGAg -3'
miRNA:   3'- -GGGugCUCCUgGCUCCC-CCaugCUCU- -5'
5256 5' -58.8 NC_001798.1 + 30046 0.72 0.527393
Target:  5'- gCCCGagagcgGGGGACaGGGGGGGagACGAGGg -3'
miRNA:   3'- -GGGUg-----CUCCUGgCUCCCCCa-UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 30756 0.72 0.490019
Target:  5'- aCCCGCGuGGagGCCGAGGcGGccGUGCGGGc -3'
miRNA:   3'- -GGGUGCuCC--UGGCUCC-CC--CAUGCUCu -5'
5256 5' -58.8 NC_001798.1 + 30937 0.68 0.712467
Target:  5'- gCgGCGGGGGUCGGGcGGGGggcggGCGGGGg -3'
miRNA:   3'- gGgUGCUCCUGGCUC-CCCCa----UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 30972 0.66 0.836858
Target:  5'- --gGCGGGGGUCGGGcGGGGgucggGCGGGGg -3'
miRNA:   3'- gggUGCUCCUGGCUC-CCCCa----UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 31005 0.66 0.836858
Target:  5'- --gGCGGGGGUCGGGcGGGGgucggGCGGGGg -3'
miRNA:   3'- gggUGCUCCUGGCUC-CCCCa----UGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.