miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5256 5' -58.8 NC_001798.1 + 31038 0.66 0.836858
Target:  5'- --gGCGGGGGUCGGGcGGGGgucggGCGGGGg -3'
miRNA:   3'- gggUGCUCCUGGCUC-CCCCa----UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 32320 0.71 0.575496
Target:  5'- gCCGCGGGGGCCGAGGaaguGUGCcAGGa -3'
miRNA:   3'- gGGUGCUCCUGGCUCCcc--CAUGcUCU- -5'
5256 5' -58.8 NC_001798.1 + 32898 0.68 0.722028
Target:  5'- gCCuCGGGGGCaGGGGGaGGUGgGGGGg -3'
miRNA:   3'- gGGuGCUCCUGgCUCCC-CCAUgCUCU- -5'
5256 5' -58.8 NC_001798.1 + 33137 0.73 0.471798
Target:  5'- cCCCGCGcaggGGGGCCGgggauGGGGGGgaaGGGAg -3'
miRNA:   3'- -GGGUGC----UCCUGGC-----UCCCCCaugCUCU- -5'
5256 5' -58.8 NC_001798.1 + 34134 0.68 0.759476
Target:  5'- aCCCGCGccugcccccccGGGAacgacgaCGGGGGGGggggaaACGGGGg -3'
miRNA:   3'- -GGGUGC-----------UCCUg------GCUCCCCCa-----UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 35416 0.66 0.820685
Target:  5'- gCCCGCGGGGGCCuaaugcGGcGGGagGCGuGGg -3'
miRNA:   3'- -GGGUGCUCCUGGcu----CC-CCCa-UGCuCU- -5'
5256 5' -58.8 NC_001798.1 + 35796 0.66 0.836858
Target:  5'- uCCUucguCGGGcGGCgGGGGGGGggcguCGGGAc -3'
miRNA:   3'- -GGGu---GCUC-CUGgCUCCCCCau---GCUCU- -5'
5256 5' -58.8 NC_001798.1 + 36252 0.66 0.836858
Target:  5'- gCCCGCGcgcuccuguguGGAccCCGGGGuGGGcgGCGGGGg -3'
miRNA:   3'- -GGGUGCu----------CCU--GGCUCC-CCCa-UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 36503 0.68 0.741864
Target:  5'- -aCGCGGGcGGCCGGGcGGGGgcgcgcggcggccggGCGGGGg -3'
miRNA:   3'- ggGUGCUC-CUGGCUC-CCCCa--------------UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 43354 0.66 0.828855
Target:  5'- cCCCGCGucGuccCCGGGGGuuguuGGUGCGAa- -3'
miRNA:   3'- -GGGUGCucCu--GGCUCCC-----CCAUGCUcu -5'
5256 5' -58.8 NC_001798.1 + 45425 0.7 0.624521
Target:  5'- gCUugGAGcGACCGAGGccccccccGGGccUACGAGGg -3'
miRNA:   3'- gGGugCUC-CUGGCUCC--------CCC--AUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 48529 0.67 0.795254
Target:  5'- gUgGCGAGGGgCGGGaGGGGcgggagggGCGGGAg -3'
miRNA:   3'- gGgUGCUCCUgGCUC-CCCCa-------UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 54378 0.7 0.644215
Target:  5'- gCCCACcgGGGGGCCGcGGcGcGGUcgGCGGGAg -3'
miRNA:   3'- -GGGUG--CUCCUGGCuCC-C-CCA--UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 55878 0.98 0.011144
Target:  5'- cCCCACGAGGA-CGAGGGGGUACGAGAa -3'
miRNA:   3'- -GGGUGCUCCUgGCUCCCCCAUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 55991 0.69 0.693163
Target:  5'- gCCGCGGGGG-CGAGGGGcugguagGCGGGu -3'
miRNA:   3'- gGGUGCUCCUgGCUCCCCca-----UGCUCu -5'
5256 5' -58.8 NC_001798.1 + 56172 0.7 0.614679
Target:  5'- gCCCG-GGGGACggCGGGGGGGUGgggUGGGGu -3'
miRNA:   3'- -GGGUgCUCCUG--GCUCCCCCAU---GCUCU- -5'
5256 5' -58.8 NC_001798.1 + 57557 0.7 0.595037
Target:  5'- uUCCGCGGGGACgCgGAGGGGGcgGCa--- -3'
miRNA:   3'- -GGGUGCUCCUG-G-CUCCCCCa-UGcucu -5'
5256 5' -58.8 NC_001798.1 + 57730 0.69 0.672692
Target:  5'- cCCCGCGaAGGACCGGuGGGcgcgcccGGcgcaGCGAGGa -3'
miRNA:   3'- -GGGUGC-UCCUGGCU-CCC-------CCa---UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 61143 0.68 0.712467
Target:  5'- aCCCucuuUGAGGGCUcgggggaggggGAGGGGGggaaGAGAg -3'
miRNA:   3'- -GGGu---GCUCCUGG-----------CUCCCCCaug-CUCU- -5'
5256 5' -58.8 NC_001798.1 + 67493 0.69 0.663873
Target:  5'- gCCGCG-GGGCCGGGGGGaucGCuGGAa -3'
miRNA:   3'- gGGUGCuCCUGGCUCCCCca-UGcUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.