miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5256 5' -58.8 NC_001798.1 + 154356 0.69 0.653069
Target:  5'- cCCC-CGGGGAgucaacccCCGGGGGGGguguuuuUugGGGGg -3'
miRNA:   3'- -GGGuGCUCCU--------GGCUCCCCC-------AugCUCU- -5'
5256 5' -58.8 NC_001798.1 + 152821 0.66 0.828855
Target:  5'- -aCGCGGGGAgCGAGGGGccGUcCGAa- -3'
miRNA:   3'- ggGUGCUCCUgGCUCCCC--CAuGCUcu -5'
5256 5' -58.8 NC_001798.1 + 152516 0.67 0.778501
Target:  5'- cCCgGCGGGGGCgGAGGGaGGgaaucccccccucuCGGGGc -3'
miRNA:   3'- -GGgUGCUCCUGgCUCCC-CCau------------GCUCU- -5'
5256 5' -58.8 NC_001798.1 + 152065 0.67 0.79872
Target:  5'- gCCCACGGGGGucccCCGAccgcuuaagcgggccGGGGGU-CGGc- -3'
miRNA:   3'- -GGGUGCUCCU----GGCU---------------CCCCCAuGCUcu -5'
5256 5' -58.8 NC_001798.1 + 150907 0.69 0.654052
Target:  5'- cCCCGCGccGGGGCgcucuuCGGGGGGcGgGCGGGAc -3'
miRNA:   3'- -GGGUGC--UCCUG------GCUCCCC-CaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 150713 0.66 0.828855
Target:  5'- cCCCcCGccGGCCGcAGGGGGaa-GAGAg -3'
miRNA:   3'- -GGGuGCucCUGGC-UCCCCCaugCUCU- -5'
5256 5' -58.8 NC_001798.1 + 150415 0.67 0.795254
Target:  5'- aCCACGGGGGCgGcGGcGGcGCGGGGc -3'
miRNA:   3'- gGGUGCUCCUGgCuCCcCCaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 150081 0.71 0.546478
Target:  5'- cCCCugGGGGG-CGAGGGGcGagcGCGGGGc -3'
miRNA:   3'- -GGGugCUCCUgGCUCCCC-Ca--UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 149749 0.7 0.604849
Target:  5'- -gCGCGGGGGCCGAGGGaGGUuucuCGu-- -3'
miRNA:   3'- ggGUGCUCCUGGCUCCC-CCAu---GCucu -5'
5256 5' -58.8 NC_001798.1 + 148035 0.66 0.828045
Target:  5'- aCCGCGuGGGCgcgggCGGGGGGGUggugguaguggugGCG-GAa -3'
miRNA:   3'- gGGUGCuCCUG-----GCUCCCCCA-------------UGCuCU- -5'
5256 5' -58.8 NC_001798.1 + 147611 0.71 0.536906
Target:  5'- gCgGCGGGGAgaGGGGGGGgggGCGGGc -3'
miRNA:   3'- gGgUGCUCCUggCUCCCCCa--UGCUCu -5'
5256 5' -58.8 NC_001798.1 + 146277 0.65 0.856846
Target:  5'- aCCGCagccgGAGaGGCCGAGcGGGGagugggcggccggGCGGGAg -3'
miRNA:   3'- gGGUG-----CUC-CUGGCUC-CCCCa------------UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 144207 0.7 0.644215
Target:  5'- cUCCGCGAGGagGCgCGcgguuAGGGGGUucGCGAGc -3'
miRNA:   3'- -GGGUGCUCC--UG-GC-----UCCCCCA--UGCUCu -5'
5256 5' -58.8 NC_001798.1 + 142488 0.7 0.595037
Target:  5'- gCCCcCGAGGcGgCGcGGGGGUGCGAu- -3'
miRNA:   3'- -GGGuGCUCC-UgGCuCCCCCAUGCUcu -5'
5256 5' -58.8 NC_001798.1 + 137444 0.78 0.231905
Target:  5'- cCCCGCGGGGAcgcgcucgcCCGGaaaucggcGGGGGUugGGGAg -3'
miRNA:   3'- -GGGUGCUCCU---------GGCU--------CCCCCAugCUCU- -5'
5256 5' -58.8 NC_001798.1 + 131385 0.66 0.843915
Target:  5'- cCCCugGGGGcCCGGcgucccaucGGGGaugacgaGUGCGAGc -3'
miRNA:   3'- -GGGugCUCCuGGCU---------CCCC-------CAUGCUCu -5'
5256 5' -58.8 NC_001798.1 + 126602 0.79 0.196483
Target:  5'- gCCCGCagcuucGGGGGCuCGGGGGGGUACGGcGAg -3'
miRNA:   3'- -GGGUG------CUCCUG-GCUCCCCCAUGCU-CU- -5'
5256 5' -58.8 NC_001798.1 + 122108 0.72 0.521715
Target:  5'- cCCgGCGGGGggcgcuuugccaGCCGGGGGGGcccccgggccgcggGCGAGGa -3'
miRNA:   3'- -GGgUGCUCC------------UGGCUCCCCCa-------------UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 116307 0.66 0.84469
Target:  5'- gCCAcCGAGacugccggauuGACgCGGGGGGGcACGAGc -3'
miRNA:   3'- gGGU-GCUC-----------CUG-GCUCCCCCaUGCUCu -5'
5256 5' -58.8 NC_001798.1 + 108697 0.66 0.852342
Target:  5'- gCCCGCGGGGAcaCCGAGGcauccgACGAcGAa -3'
miRNA:   3'- -GGGUGCUCCU--GGCUCCccca--UGCU-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.