miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5256 5' -58.8 NC_001798.1 + 108627 0.71 0.585251
Target:  5'- uCCCGCGGGGAgaCGAcGGGGcgacCGAGAg -3'
miRNA:   3'- -GGGUGCUCCUg-GCUcCCCCau--GCUCU- -5'
5256 5' -58.8 NC_001798.1 + 101963 0.66 0.836858
Target:  5'- cCCCGgauaGAGGAggccCCGGGGGGGcgaugUGCGGc- -3'
miRNA:   3'- -GGGUg---CUCCU----GGCUCCCCC-----AUGCUcu -5'
5256 5' -58.8 NC_001798.1 + 101913 0.67 0.801306
Target:  5'- --aGCG-GGACCGGggguaaccgcaacuGGGGGaUACGAGGg -3'
miRNA:   3'- gggUGCuCCUGGCU--------------CCCCC-AUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 101857 0.68 0.731518
Target:  5'- cCCgGCGGcGGCgGAGGGGGgugggcgugUGCGGGGg -3'
miRNA:   3'- -GGgUGCUcCUGgCUCCCCC---------AUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 100981 0.66 0.820685
Target:  5'- aCCC-CGGGGGCgUGGGcGGGGaGgGGGAg -3'
miRNA:   3'- -GGGuGCUCCUG-GCUC-CCCCaUgCUCU- -5'
5256 5' -58.8 NC_001798.1 + 100349 0.67 0.795254
Target:  5'- gCCCGCu--GAUCGAGGGGcagcuggGCGAGAa -3'
miRNA:   3'- -GGGUGcucCUGGCUCCCCca-----UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 97479 0.72 0.490019
Target:  5'- gCCgGCGGcGcGACCGGGGGGGc-CGAGGa -3'
miRNA:   3'- -GGgUGCU-C-CUGGCUCCCCCauGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 96971 0.66 0.852342
Target:  5'- gCUgGCGcGGACCGcGGcGGGcgGCGGGGc -3'
miRNA:   3'- -GGgUGCuCCUGGCuCC-CCCa-UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 93471 0.77 0.285178
Target:  5'- aCCGCGAGGGCCacguGGugcccGGGUACGAGGg -3'
miRNA:   3'- gGGUGCUCCUGGcu--CC-----CCCAUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 92246 0.68 0.759476
Target:  5'- uCCUcCG-GGGCCGAuGGGGUACGuGu -3'
miRNA:   3'- -GGGuGCuCCUGGCUcCCCCAUGCuCu -5'
5256 5' -58.8 NC_001798.1 + 90098 0.7 0.633384
Target:  5'- cCCCugGAGGcgagaucGCUGAGGuGGGacuCGGGGa -3'
miRNA:   3'- -GGGugCUCC-------UGGCUCC-CCCau-GCUCU- -5'
5256 5' -58.8 NC_001798.1 + 87773 0.66 0.84469
Target:  5'- gCCACGucGuCCG-GGGGGUGCcacgucucGGGAa -3'
miRNA:   3'- gGGUGCucCuGGCuCCCCCAUG--------CUCU- -5'
5256 5' -58.8 NC_001798.1 + 85807 0.72 0.499252
Target:  5'- gCCUcCGGGGGCgaugaCGGGGGGGgGCGGGGg -3'
miRNA:   3'- -GGGuGCUCCUG-----GCUCCCCCaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 85260 0.72 0.517001
Target:  5'- gCCGCGcGGGGCCGcgcgcgaggcuucGGGGGG-GCGGGGg -3'
miRNA:   3'- gGGUGC-UCCUGGC-------------UCCCCCaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 83252 0.7 0.614679
Target:  5'- aCCCGcCGAGGACUcacGGGGUGCuGGGGg -3'
miRNA:   3'- -GGGU-GCUCCUGGcucCCCCAUG-CUCU- -5'
5256 5' -58.8 NC_001798.1 + 83203 0.66 0.820685
Target:  5'- aCCACccgggaagGGGGAaaGGGGGGcaACGAGAg -3'
miRNA:   3'- gGGUG--------CUCCUggCUCCCCcaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 81266 0.73 0.427826
Target:  5'- aCCCGCG-GGACCuugcGGGGGGGgaugGCG-GAu -3'
miRNA:   3'- -GGGUGCuCCUGG----CUCCCCCa---UGCuCU- -5'
5256 5' -58.8 NC_001798.1 + 80523 0.66 0.832077
Target:  5'- gCCugGAGucuggccagacgcucGGCCcggcGGGGGGGcGCGAGGc -3'
miRNA:   3'- gGGugCUC---------------CUGG----CUCCCCCaUGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 78915 0.75 0.340254
Target:  5'- uCCCugGAGGagGCCGAGGcGGaGUgggACGAGGu -3'
miRNA:   3'- -GGGugCUCC--UGGCUCC-CC-CA---UGCUCU- -5'
5256 5' -58.8 NC_001798.1 + 78119 0.68 0.759476
Target:  5'- aCCACGAGG-CCGuGGGGcGccugGCGGa- -3'
miRNA:   3'- gGGUGCUCCuGGCuCCCC-Ca---UGCUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.