Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 77518 | 0.67 | 0.768597 |
Target: 5'- cCUCGCG-GGGCaCGAGGcuGGGUuCGGGGg -3' miRNA: 3'- -GGGUGCuCCUG-GCUCC--CCCAuGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 77360 | 0.68 | 0.712467 |
Target: 5'- gCCCugGAGG-CgCGGGGGGccaucgACGAGc -3' miRNA: 3'- -GGGugCUCCuG-GCUCCCCca----UGCUCu -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 74511 | 0.66 | 0.84469 |
Target: 5'- cCCUGCGGGGcgagAUCGGGGGGcu-CGGGGc -3' miRNA: 3'- -GGGUGCUCC----UGGCUCCCCcauGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 72320 | 0.68 | 0.75025 |
Target: 5'- gCCCugGcGGcCCG-GGGGGUGCugcaGGAg -3' miRNA: 3'- -GGGugCuCCuGGCuCCCCCAUGc---UCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 67493 | 0.69 | 0.663873 |
Target: 5'- gCCGCG-GGGCCGGGGGGaucGCuGGAa -3' miRNA: 3'- gGGUGCuCCUGGCUCCCCca-UGcUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 61143 | 0.68 | 0.712467 |
Target: 5'- aCCCucuuUGAGGGCUcgggggaggggGAGGGGGggaaGAGAg -3' miRNA: 3'- -GGGu---GCUCCUGG-----------CUCCCCCaug-CUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 57730 | 0.69 | 0.672692 |
Target: 5'- cCCCGCGaAGGACCGGuGGGcgcgcccGGcgcaGCGAGGa -3' miRNA: 3'- -GGGUGC-UCCUGGCU-CCC-------CCa---UGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 57557 | 0.7 | 0.595037 |
Target: 5'- uUCCGCGGGGACgCgGAGGGGGcgGCa--- -3' miRNA: 3'- -GGGUGCUCCUG-G-CUCCCCCa-UGcucu -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 56172 | 0.7 | 0.614679 |
Target: 5'- gCCCG-GGGGACggCGGGGGGGUGgggUGGGGu -3' miRNA: 3'- -GGGUgCUCCUG--GCUCCCCCAU---GCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 55991 | 0.69 | 0.693163 |
Target: 5'- gCCGCGGGGG-CGAGGGGcugguagGCGGGu -3' miRNA: 3'- gGGUGCUCCUgGCUCCCCca-----UGCUCu -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 55878 | 0.98 | 0.011144 |
Target: 5'- cCCCACGAGGA-CGAGGGGGUACGAGAa -3' miRNA: 3'- -GGGUGCUCCUgGCUCCCCCAUGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 54378 | 0.7 | 0.644215 |
Target: 5'- gCCCACcgGGGGGCCGcGGcGcGGUcgGCGGGAg -3' miRNA: 3'- -GGGUG--CUCCUGGCuCC-C-CCA--UGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 48529 | 0.67 | 0.795254 |
Target: 5'- gUgGCGAGGGgCGGGaGGGGcgggagggGCGGGAg -3' miRNA: 3'- gGgUGCUCCUgGCUC-CCCCa-------UGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 45425 | 0.7 | 0.624521 |
Target: 5'- gCUugGAGcGACCGAGGccccccccGGGccUACGAGGg -3' miRNA: 3'- gGGugCUC-CUGGCUCC--------CCC--AUGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 43354 | 0.66 | 0.828855 |
Target: 5'- cCCCGCGucGuccCCGGGGGuuguuGGUGCGAa- -3' miRNA: 3'- -GGGUGCucCu--GGCUCCC-----CCAUGCUcu -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 36503 | 0.68 | 0.741864 |
Target: 5'- -aCGCGGGcGGCCGGGcGGGGgcgcgcggcggccggGCGGGGg -3' miRNA: 3'- ggGUGCUC-CUGGCUC-CCCCa--------------UGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 36252 | 0.66 | 0.836858 |
Target: 5'- gCCCGCGcgcuccuguguGGAccCCGGGGuGGGcgGCGGGGg -3' miRNA: 3'- -GGGUGCu----------CCU--GGCUCC-CCCa-UGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 35796 | 0.66 | 0.836858 |
Target: 5'- uCCUucguCGGGcGGCgGGGGGGGggcguCGGGAc -3' miRNA: 3'- -GGGu---GCUC-CUGgCUCCCCCau---GCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 35416 | 0.66 | 0.820685 |
Target: 5'- gCCCGCGGGGGCCuaaugcGGcGGGagGCGuGGg -3' miRNA: 3'- -GGGUGCUCCUGGcu----CC-CCCa-UGCuCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 34134 | 0.68 | 0.759476 |
Target: 5'- aCCCGCGccugcccccccGGGAacgacgaCGGGGGGGggggaaACGGGGg -3' miRNA: 3'- -GGGUGC-----------UCCUg------GCUCCCCCa-----UGCUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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