Results 81 - 100 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 15397 | 0.66 | 0.852342 |
Target: 5'- gCCCACc-GGAcCCGGGGuugcGGGUcCGGGAg -3' miRNA: 3'- -GGGUGcuCCU-GGCUCC----CCCAuGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 15223 | 0.69 | 0.677581 |
Target: 5'- gUCCGCGgguccguguGGGugCGucuuuggguccguugGGGGGGUACGGGc -3' miRNA: 3'- -GGGUGC---------UCCugGC---------------UCCCCCAUGCUCu -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 15178 | 0.68 | 0.730572 |
Target: 5'- gCCGCGAuguucggGGGgUGGGGGGGcugGCGAGc -3' miRNA: 3'- gGGUGCU-------CCUgGCUCCCCCa--UGCUCu -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 14276 | 0.66 | 0.818203 |
Target: 5'- cCCCACGAugaGGGggacggcaaagcccCCGgaacggaugaguGGGGGGUGCGuGGg -3' miRNA: 3'- -GGGUGCU---CCU--------------GGC------------UCCCCCAUGCuCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 13024 | 0.66 | 0.828855 |
Target: 5'- gCCUuCGAGGugaggcacgcuGCCGGGGGGaUGCGcAGGg -3' miRNA: 3'- -GGGuGCUCC-----------UGGCUCCCCcAUGC-UCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 12802 | 0.66 | 0.84469 |
Target: 5'- aUCCucuaaGAGGGCCGAGuccucGGGGUcuuccggaACGAGu -3' miRNA: 3'- -GGGug---CUCCUGGCUC-----CCCCA--------UGCUCu -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 11655 | 0.68 | 0.740928 |
Target: 5'- uCCC-CGGGGGCgGGggucgggucucGGGGGgaggACGGGGg -3' miRNA: 3'- -GGGuGCUCCUGgCU-----------CCCCCa---UGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 11225 | 0.67 | 0.768597 |
Target: 5'- cUCUugGGGGGCCGucGGGccacUGCGGGGc -3' miRNA: 3'- -GGGugCUCCUGGCucCCCc---AUGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 10583 | 0.66 | 0.84469 |
Target: 5'- gCCCGCGGGGAaCGGGGGacuGUaugcuaugGCGAGc -3' miRNA: 3'- -GGGUGCUCCUgGCUCCCc--CA--------UGCUCu -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 10275 | 0.74 | 0.386373 |
Target: 5'- -aCACGAGGGugcgUCGGGGGGGcgACGGGGg -3' miRNA: 3'- ggGUGCUCCU----GGCUCCCCCa-UGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 9102 | 0.69 | 0.654052 |
Target: 5'- gCCACGGGaaaGGCCGcGGGGGagccgccGCGAGGu -3' miRNA: 3'- gGGUGCUC---CUGGCuCCCCCa------UGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 8299 | 0.68 | 0.75025 |
Target: 5'- cUCCugGGGG---GGGGGGG-GCGAGAg -3' miRNA: 3'- -GGGugCUCCuggCUCCCCCaUGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 6588 | 0.68 | 0.759476 |
Target: 5'- gCCGgGGGGACgGGGGGacGGgcCGGGGg -3' miRNA: 3'- gGGUgCUCCUGgCUCCC--CCauGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 6546 | 0.68 | 0.759476 |
Target: 5'- gCCGgGGGGACgGGGGGacGGgcCGGGGg -3' miRNA: 3'- gGGUgCUCCUGgCUCCC--CCauGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 6397 | 0.72 | 0.480866 |
Target: 5'- gCCG-GGGGGCCG-GGGGG-ACGGGGg -3' miRNA: 3'- gGGUgCUCCUGGCuCCCCCaUGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 6360 | 0.7 | 0.644215 |
Target: 5'- gCCGgGGGGACgGGccGGGGGgcCGGGGg -3' miRNA: 3'- gGGUgCUCCUGgCU--CCCCCauGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 6321 | 0.67 | 0.768597 |
Target: 5'- gCCGgGGGGACgGGccGGGGGgACGGGc -3' miRNA: 3'- gGGUgCUCCUGgCU--CCCCCaUGCUCu -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 6295 | 0.67 | 0.768597 |
Target: 5'- gCCGgGGGGACgGGccGGGGGgACGGGc -3' miRNA: 3'- gGGUgCUCCUGgCU--CCCCCaUGCUCu -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 6269 | 0.67 | 0.768597 |
Target: 5'- gCCGgGGGGACgGGccGGGGGgACGGGc -3' miRNA: 3'- gGGUgCUCCUGgCU--CCCCCaUGCUCu -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 6224 | 0.75 | 0.355174 |
Target: 5'- aCCCG-GGGGGCCGGccGGGGGgacggGCGGGGg -3' miRNA: 3'- -GGGUgCUCCUGGCU--CCCCCa----UGCUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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