Results 101 - 104 of 104 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 30016 | 0.67 | 0.777606 |
Target: 5'- cCUCugGGGGGgCGAGGGaGGca-GGGAg -3' miRNA: 3'- -GGGugCUCCUgGCUCCC-CCaugCUCU- -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 77518 | 0.67 | 0.768597 |
Target: 5'- cCUCGCG-GGGCaCGAGGcuGGGUuCGGGGg -3' miRNA: 3'- -GGGUGCuCCUG-GCUCC--CCCAuGCUCU- -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 11225 | 0.67 | 0.768597 |
Target: 5'- cUCUugGGGGGCCGucGGGccacUGCGGGGc -3' miRNA: 3'- -GGGugCUCCUGGCucCCCc---AUGCUCU- -5' |
|||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 36503 | 0.68 | 0.741864 |
Target: 5'- -aCGCGGGcGGCCGGGcGGGGgcgcgcggcggccggGCGGGGg -3' miRNA: 3'- ggGUGCUC-CUGGCUC-CCCCa--------------UGCUCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home