Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5256 | 5' | -58.8 | NC_001798.1 | + | 10583 | 0.66 | 0.84469 |
Target: 5'- gCCCGCGGGGAaCGGGGGacuGUaugcuaugGCGAGc -3' miRNA: 3'- -GGGUGCUCCUgGCUCCCc--CA--------UGCUCu -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 74511 | 0.66 | 0.84469 |
Target: 5'- cCCUGCGGGGcgagAUCGGGGGGcu-CGGGGc -3' miRNA: 3'- -GGGUGCUCC----UGGCUCCCCcauGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 96971 | 0.66 | 0.852342 |
Target: 5'- gCUgGCGcGGACCGcGGcGGGcgGCGGGGc -3' miRNA: 3'- -GGgUGCuCCUGGCuCC-CCCa-UGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 15397 | 0.66 | 0.852342 |
Target: 5'- gCCCACc-GGAcCCGGGGuugcGGGUcCGGGAg -3' miRNA: 3'- -GGGUGcuCCU-GGCUCC----CCCAuGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 108697 | 0.66 | 0.852342 |
Target: 5'- gCCCGCGGGGAcaCCGAGGcauccgACGAcGAa -3' miRNA: 3'- -GGGUGCUCCU--GGCUCCccca--UGCU-CU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 31005 | 0.66 | 0.836858 |
Target: 5'- --gGCGGGGGUCGGGcGGGGgucggGCGGGGg -3' miRNA: 3'- gggUGCUCCUGGCUC-CCCCa----UGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 30972 | 0.66 | 0.836858 |
Target: 5'- --gGCGGGGGUCGGGcGGGGgucggGCGGGGg -3' miRNA: 3'- gggUGCUCCUGGCUC-CCCCa----UGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 101913 | 0.67 | 0.801306 |
Target: 5'- --aGCG-GGACCGGggguaaccgcaacuGGGGGaUACGAGGg -3' miRNA: 3'- gggUGCuCCUGGCU--------------CCCCC-AUGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 27124 | 0.67 | 0.812357 |
Target: 5'- cCCCGC-AGGAgCGGGagggaaggcacGGGGcGCGGGAg -3' miRNA: 3'- -GGGUGcUCCUgGCUC-----------CCCCaUGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 14276 | 0.66 | 0.818203 |
Target: 5'- cCCCACGAugaGGGggacggcaaagcccCCGgaacggaugaguGGGGGGUGCGuGGg -3' miRNA: 3'- -GGGUGCU---CCU--------------GGC------------UCCCCCAUGCuCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 35416 | 0.66 | 0.820685 |
Target: 5'- gCCCGCGGGGGCCuaaugcGGcGGGagGCGuGGg -3' miRNA: 3'- -GGGUGCUCCUGGcu----CC-CCCa-UGCuCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 83203 | 0.66 | 0.820685 |
Target: 5'- aCCACccgggaagGGGGAaaGGGGGGcaACGAGAg -3' miRNA: 3'- gGGUG--------CUCCUggCUCCCCcaUGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 100981 | 0.66 | 0.820685 |
Target: 5'- aCCC-CGGGGGCgUGGGcGGGGaGgGGGAg -3' miRNA: 3'- -GGGuGCUCCUG-GCUC-CCCCaUgCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 148035 | 0.66 | 0.828045 |
Target: 5'- aCCGCGuGGGCgcgggCGGGGGGGUggugguaguggugGCG-GAa -3' miRNA: 3'- gGGUGCuCCUG-----GCUCCCCCA-------------UGCuCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 13024 | 0.66 | 0.828855 |
Target: 5'- gCCUuCGAGGugaggcacgcuGCCGGGGGGaUGCGcAGGg -3' miRNA: 3'- -GGGuGCUCC-----------UGGCUCCCCcAUGC-UCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 27698 | 0.66 | 0.828855 |
Target: 5'- uCCC-CGGGGGaaaaGAGGcGGG-GCGGGAg -3' miRNA: 3'- -GGGuGCUCCUgg--CUCC-CCCaUGCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 150713 | 0.66 | 0.828855 |
Target: 5'- cCCCcCGccGGCCGcAGGGGGaa-GAGAg -3' miRNA: 3'- -GGGuGCucCUGGC-UCCCCCaugCUCU- -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 152821 | 0.66 | 0.828855 |
Target: 5'- -aCGCGGGGAgCGAGGGGccGUcCGAa- -3' miRNA: 3'- ggGUGCUCCUgGCUCCCC--CAuGCUcu -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 43354 | 0.66 | 0.828855 |
Target: 5'- cCCCGCGucGuccCCGGGGGuuguuGGUGCGAa- -3' miRNA: 3'- -GGGUGCucCu--GGCUCCC-----CCAUGCUcu -5' |
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5256 | 5' | -58.8 | NC_001798.1 | + | 80523 | 0.66 | 0.832077 |
Target: 5'- gCCugGAGucuggccagacgcucGGCCcggcGGGGGGGcGCGAGGc -3' miRNA: 3'- gGGugCUC---------------CUGG----CUCCCCCaUGCUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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