miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5257 5' -55.8 NC_001798.1 + 16205 0.66 0.908802
Target:  5'- gGCCGccCUCCGcaCGCgCCGCCuGUGGg -3'
miRNA:   3'- aCGGCa-GAGGCaaGUG-GGUGGuCAUU- -5'
5257 5' -55.8 NC_001798.1 + 131733 0.66 0.908802
Target:  5'- uUGCCGaCUUCGUcaccuacuucUCAUCCACCAa--- -3'
miRNA:   3'- -ACGGCaGAGGCA----------AGUGGGUGGUcauu -5'
5257 5' -55.8 NC_001798.1 + 122889 0.66 0.908802
Target:  5'- cGCCGaCUCCGa-CGCCCACUAc--- -3'
miRNA:   3'- aCGGCaGAGGCaaGUGGGUGGUcauu -5'
5257 5' -55.8 NC_001798.1 + 116584 0.66 0.88931
Target:  5'- gGUgGUC-CCGgagaUCGCCC-CCGGUGAg -3'
miRNA:   3'- aCGgCAGaGGCa---AGUGGGuGGUCAUU- -5'
5257 5' -55.8 NC_001798.1 + 109793 0.66 0.882346
Target:  5'- cGCCGaUCUCCGggccgCGCUaGCCAGg-- -3'
miRNA:   3'- aCGGC-AGAGGCaa---GUGGgUGGUCauu -5'
5257 5' -55.8 NC_001798.1 + 152388 0.67 0.875154
Target:  5'- cGCCG-CUCCG-UCGCUCG-CAGUGc -3'
miRNA:   3'- aCGGCaGAGGCaAGUGGGUgGUCAUu -5'
5257 5' -55.8 NC_001798.1 + 149310 0.67 0.867741
Target:  5'- gGCCGUggaagUCCaGcgCGCCCACCAGg-- -3'
miRNA:   3'- aCGGCAg----AGG-CaaGUGGGUGGUCauu -5'
5257 5' -55.8 NC_001798.1 + 38495 0.67 0.867741
Target:  5'- cGCCccggaGUCUCCGcccCACCCGCCGc--- -3'
miRNA:   3'- aCGG-----CAGAGGCaa-GUGGGUGGUcauu -5'
5257 5' -55.8 NC_001798.1 + 58690 0.67 0.863189
Target:  5'- cGCCGUCagggCCGcggcggcgcgggggUCgAUCCACCAGUAGc -3'
miRNA:   3'- aCGGCAGa---GGCa-------------AG-UGGGUGGUCAUU- -5'
5257 5' -55.8 NC_001798.1 + 4794 0.67 0.859337
Target:  5'- gGCCucGUCUUCGUUCuccuccgGCCCACC-GUGc -3'
miRNA:   3'- aCGG--CAGAGGCAAG-------UGGGUGGuCAUu -5'
5257 5' -55.8 NC_001798.1 + 27047 0.67 0.852272
Target:  5'- gGCaCGUCUCCcg-CGCCCGCgGGg-- -3'
miRNA:   3'- aCG-GCAGAGGcaaGUGGGUGgUCauu -5'
5257 5' -55.8 NC_001798.1 + 79565 0.67 0.845042
Target:  5'- gGCCGUCagcgcucuggaucugCCGUUCGCC-ACCAGc-- -3'
miRNA:   3'- aCGGCAGa--------------GGCAAGUGGgUGGUCauu -5'
5257 5' -55.8 NC_001798.1 + 67863 0.68 0.810163
Target:  5'- cGCCGUCaaguccCCGaagCACCCACCuguuGUGGu -3'
miRNA:   3'- aCGGCAGa-----GGCaa-GUGGGUGGu---CAUU- -5'
5257 5' -55.8 NC_001798.1 + 153295 0.68 0.792108
Target:  5'- cGCCGUCUUCGUggGCCCGggcUCGGg-- -3'
miRNA:   3'- aCGGCAGAGGCAagUGGGU---GGUCauu -5'
5257 5' -55.8 NC_001798.1 + 130238 0.68 0.792108
Target:  5'- aGCCcggGUCUCCGggCgGCCCGCCAc--- -3'
miRNA:   3'- aCGG---CAGAGGCaaG-UGGGUGGUcauu -5'
5257 5' -55.8 NC_001798.1 + 153452 0.69 0.763945
Target:  5'- gGCCGUCUCCca--GgCCACCAGa-- -3'
miRNA:   3'- aCGGCAGAGGcaagUgGGUGGUCauu -5'
5257 5' -55.8 NC_001798.1 + 31465 0.69 0.754305
Target:  5'- cGCCGUCUCCGcgCcgcCCCGCgGGc-- -3'
miRNA:   3'- aCGGCAGAGGCaaGu--GGGUGgUCauu -5'
5257 5' -55.8 NC_001798.1 + 110030 0.71 0.63275
Target:  5'- cGCCuucGUC-CCGgaggcCACCCACCAGUGu -3'
miRNA:   3'- aCGG---CAGaGGCaa---GUGGGUGGUCAUu -5'
5257 5' -55.8 NC_001798.1 + 126307 0.77 0.350119
Target:  5'- cGCCGUCUCCGga-GCCCGCCccgGGUc- -3'
miRNA:   3'- aCGGCAGAGGCaagUGGGUGG---UCAuu -5'
5257 5' -55.8 NC_001798.1 + 55671 1.06 0.004276
Target:  5'- aUGCCGUCUCCGUUCACCCACCAGUAAc -3'
miRNA:   3'- -ACGGCAGAGGCAAGUGGGUGGUCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.