miRNA display CGI


Results 1 - 20 of 361 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5258 3' -60 NC_001798.1 + 2114 0.66 0.81464
Target:  5'- gGCG-CGGCCCG-CGGccAgGUCcUCGCCc -3'
miRNA:   3'- -UGCuGCCGGGCuGCU--UgCAGcGGCGG- -5'
5258 3' -60 NC_001798.1 + 135368 0.66 0.81464
Target:  5'- cCGGCagcuGCUCGGCGGG-GUCaugGCCGCCg -3'
miRNA:   3'- uGCUGc---CGGGCUGCUUgCAG---CGGCGG- -5'
5258 3' -60 NC_001798.1 + 77373 0.66 0.81381
Target:  5'- -gGGgGGCCauCGACGAGCucacgacccugggGUCggcgGCCGCCg -3'
miRNA:   3'- ugCUgCCGG--GCUGCUUG-------------CAG----CGGCGG- -5'
5258 3' -60 NC_001798.1 + 1726 0.66 0.806276
Target:  5'- aGC-ACGGUgCGGCGcAgGUCccgcGCCGCCg -3'
miRNA:   3'- -UGcUGCCGgGCUGCuUgCAG----CGGCGG- -5'
5258 3' -60 NC_001798.1 + 25459 0.66 0.806276
Target:  5'- gGCGGCGcGCCCGcCGccuuCGgccCGCUGCg -3'
miRNA:   3'- -UGCUGC-CGGGCuGCuu--GCa--GCGGCGg -5'
5258 3' -60 NC_001798.1 + 58465 0.66 0.806276
Target:  5'- gAUGuuuuCGGgCCGuGCGGcccCGUCGCCGCa -3'
miRNA:   3'- -UGCu---GCCgGGC-UGCUu--GCAGCGGCGg -5'
5258 3' -60 NC_001798.1 + 72405 0.66 0.806276
Target:  5'- uGCGGCuGCaCauGCGcACGcUCGCCGCCu -3'
miRNA:   3'- -UGCUGcCG-GgcUGCuUGC-AGCGGCGG- -5'
5258 3' -60 NC_001798.1 + 75038 0.66 0.806276
Target:  5'- -aGAaGGCCCc-----CGUCGCCGCCg -3'
miRNA:   3'- ugCUgCCGGGcugcuuGCAGCGGCGG- -5'
5258 3' -60 NC_001798.1 + 76072 0.66 0.806276
Target:  5'- uGCGGauccaGGCCCGcCGGGCGaucgagagCGCgGUCa -3'
miRNA:   3'- -UGCUg----CCGGGCuGCUUGCa-------GCGgCGG- -5'
5258 3' -60 NC_001798.1 + 77029 0.66 0.806276
Target:  5'- cGCGACGGCuCUGGcCGGccuGCaUC-CCGCCu -3'
miRNA:   3'- -UGCUGCCG-GGCU-GCU---UGcAGcGGCGG- -5'
5258 3' -60 NC_001798.1 + 77237 0.66 0.806276
Target:  5'- cAUGGCGcCCUGGCGGACG-CGgUGUCg -3'
miRNA:   3'- -UGCUGCcGGGCUGCUUGCaGCgGCGG- -5'
5258 3' -60 NC_001798.1 + 154318 0.66 0.806276
Target:  5'- gGCGGCGGCagGACGGggAC-UC-CCGCCc -3'
miRNA:   3'- -UGCUGCCGggCUGCU--UGcAGcGGCGG- -5'
5258 3' -60 NC_001798.1 + 115491 0.66 0.806276
Target:  5'- cACGACcccgucgaGGCCgCGaauccguacgggGCGuACGUCGCgGCCc -3'
miRNA:   3'- -UGCUG--------CCGG-GC------------UGCuUGCAGCGgCGG- -5'
5258 3' -60 NC_001798.1 + 87738 0.66 0.806276
Target:  5'- cCGcCGGCCCGAaccccgcggcccUGAGcCG-CGCgGCCa -3'
miRNA:   3'- uGCuGCCGGGCU------------GCUU-GCaGCGgCGG- -5'
5258 3' -60 NC_001798.1 + 134733 0.66 0.806276
Target:  5'- gGCGACGGguucuccgcCCCGGCGcugGUCGCCcucuuCCg -3'
miRNA:   3'- -UGCUGCC---------GGGCUGCuugCAGCGGc----GG- -5'
5258 3' -60 NC_001798.1 + 83329 0.66 0.806276
Target:  5'- aACGAgGGCCgcagccauuCGGCcgcGGCGUCGcCCGCg -3'
miRNA:   3'- -UGCUgCCGG---------GCUGc--UUGCAGC-GGCGg -5'
5258 3' -60 NC_001798.1 + 105613 0.66 0.805431
Target:  5'- gGCGGCGGgCgGGCGAcgACGgCGCUccgggaagaauugGCCg -3'
miRNA:   3'- -UGCUGCCgGgCUGCU--UGCaGCGG-------------CGG- -5'
5258 3' -60 NC_001798.1 + 53971 0.66 0.805431
Target:  5'- gGCGGCGGUCagCGACGuccugggccaccuGACG-CGCCugGCCc -3'
miRNA:   3'- -UGCUGCCGG--GCUGC-------------UUGCaGCGG--CGG- -5'
5258 3' -60 NC_001798.1 + 56796 0.66 0.801188
Target:  5'- cCGACGGCCgCggaggucacgguggaGACGGugGaaaaGCCGUCg -3'
miRNA:   3'- uGCUGCCGG-G---------------CUGCUugCag--CGGCGG- -5'
5258 3' -60 NC_001798.1 + 26052 0.66 0.797768
Target:  5'- cACG-CGcGCCUGuACcccGACG-CGCCGCCg -3'
miRNA:   3'- -UGCuGC-CGGGC-UGc--UUGCaGCGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.