miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5258 5' -52.3 NC_001798.1 + 77208 0.66 0.986038
Target:  5'- ----cGGCGAcGGU--GGACGCGGCCGu -3'
miRNA:   3'- gacaaCUGCU-UCGagUUUGCGCCGGC- -5'
5258 5' -52.3 NC_001798.1 + 36414 0.66 0.986038
Target:  5'- cCUGccgGGCGggGCggugGGGCGgGGUCGg -3'
miRNA:   3'- -GACaa-CUGCuuCGag--UUUGCgCCGGC- -5'
5258 5' -52.3 NC_001798.1 + 113799 0.66 0.986038
Target:  5'- cCUGUUGGgcacagUGGGuGCUCGgggacagagGACGCcGGCCGg -3'
miRNA:   3'- -GACAACU------GCUU-CGAGU---------UUGCG-CCGGC- -5'
5258 5' -52.3 NC_001798.1 + 152407 0.66 0.984262
Target:  5'- ---gUGcCGggGUgCGAAUGCGGCCc -3'
miRNA:   3'- gacaACuGCuuCGaGUUUGCGCCGGc -5'
5258 5' -52.3 NC_001798.1 + 27222 0.66 0.984262
Target:  5'- ----gGGCGggGCgcgggGGAgGCGGCCGc -3'
miRNA:   3'- gacaaCUGCuuCGag---UUUgCGCCGGC- -5'
5258 5' -52.3 NC_001798.1 + 65338 0.66 0.982319
Target:  5'- aUGaUGAaGggGCUucCGGugGUGGCCGc -3'
miRNA:   3'- gACaACUgCuuCGA--GUUugCGCCGGC- -5'
5258 5' -52.3 NC_001798.1 + 48191 0.66 0.982319
Target:  5'- gCUGgcGGCGGuacAGCUgugggaCAuguCGCGGCCGc -3'
miRNA:   3'- -GACaaCUGCU---UCGA------GUuu-GCGCCGGC- -5'
5258 5' -52.3 NC_001798.1 + 29917 0.66 0.981702
Target:  5'- -cGcgGGCGGugGGCUCGggggcgggacgcuuGACGgGGCCGa -3'
miRNA:   3'- gaCaaCUGCU--UCGAGU--------------UUGCgCCGGC- -5'
5258 5' -52.3 NC_001798.1 + 31278 0.66 0.980201
Target:  5'- uCUGggGGCGGcccuGC-CGu-CGCGGCCGu -3'
miRNA:   3'- -GACaaCUGCUu---CGaGUuuGCGCCGGC- -5'
5258 5' -52.3 NC_001798.1 + 39724 0.66 0.980201
Target:  5'- -gGUcGACGggGgUUGGAUGCgGGCCa -3'
miRNA:   3'- gaCAaCUGCuuCgAGUUUGCG-CCGGc -5'
5258 5' -52.3 NC_001798.1 + 22492 0.67 0.976426
Target:  5'- -aGgcGACGggGCgaucguccaCAcggagcgcggcuaccGACGCGGCCGc -3'
miRNA:   3'- gaCaaCUGCuuCGa--------GU---------------UUGCGCCGGC- -5'
5258 5' -52.3 NC_001798.1 + 143114 0.67 0.975146
Target:  5'- -cGUUGcgGCGguGCUCcGcgcuugcgcuggcGCGCGGCCGu -3'
miRNA:   3'- gaCAAC--UGCuuCGAGuU-------------UGCGCCGGC- -5'
5258 5' -52.3 NC_001798.1 + 2636 0.67 0.973814
Target:  5'- cCUGgccggGGCGggGCUCuuGCgcuugcgcgccucccGCGGCgCGg -3'
miRNA:   3'- -GACaa---CUGCuuCGAGuuUG---------------CGCCG-GC- -5'
5258 5' -52.3 NC_001798.1 + 128133 0.67 0.972713
Target:  5'- --cUUGGCGGAaacGUUCGAgcgccaccuGCGCGGCCu -3'
miRNA:   3'- gacAACUGCUU---CGAGUU---------UGCGCCGGc -5'
5258 5' -52.3 NC_001798.1 + 88082 0.67 0.972713
Target:  5'- -cGgcGGCGucuAGCUCGcggAGgGCGGCCa -3'
miRNA:   3'- gaCaaCUGCu--UCGAGU---UUgCGCCGGc -5'
5258 5' -52.3 NC_001798.1 + 31340 0.67 0.972713
Target:  5'- ----cGGCGGggGGCgcgcgCAGGCGCGGCgGg -3'
miRNA:   3'- gacaaCUGCU--UCGa----GUUUGCGCCGgC- -5'
5258 5' -52.3 NC_001798.1 + 126718 0.67 0.969813
Target:  5'- cCUGcucgUGGgGGAgugcGCUCuucGCGCGGCCGc -3'
miRNA:   3'- -GACa---ACUgCUU----CGAGuu-UGCGCCGGC- -5'
5258 5' -52.3 NC_001798.1 + 95542 0.67 0.969813
Target:  5'- ---aUGGCGAGuGgUCGaccGACGCGGCCc -3'
miRNA:   3'- gacaACUGCUU-CgAGU---UUGCGCCGGc -5'
5258 5' -52.3 NC_001798.1 + 121795 0.67 0.969813
Target:  5'- ----gGGCGggGC-CGGGC-CGGCCGu -3'
miRNA:   3'- gacaaCUGCuuCGaGUUUGcGCCGGC- -5'
5258 5' -52.3 NC_001798.1 + 77245 0.67 0.969813
Target:  5'- cCUGgcgGACGcGGUgUCGgcccugGGCGCGGCCGc -3'
miRNA:   3'- -GACaa-CUGCuUCG-AGU------UUGCGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.