miRNA display CGI


Results 21 - 40 of 173 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5259 3' -53.4 NC_001798.1 + 49839 0.66 0.972305
Target:  5'- -cGCUGGuGCGAaGUGCGGCGGcggaggaACCCg -3'
miRNA:   3'- gaCGGCCcUGUUcUAUGUUGCC-------UGGG- -5'
5259 3' -53.4 NC_001798.1 + 86629 0.66 0.970886
Target:  5'- cCUGCggcaacgaguucgaGGGGCGGGucuGUAUAgcccuGCGGGCCCu -3'
miRNA:   3'- -GACGg-------------CCCUGUUC---UAUGU-----UGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 66878 0.66 0.969714
Target:  5'- -cGCCGGGGCuugGGAaagGCcacgggGGCGGGgCCg -3'
miRNA:   3'- gaCGGCCCUGu--UCUa--UG------UUGCCUgGG- -5'
5259 3' -53.4 NC_001798.1 + 138769 0.66 0.969714
Target:  5'- gCUGCCGGGGCAGcguGUGCugccugagaAACGccCCCa -3'
miRNA:   3'- -GACGGCCCUGUUc--UAUG---------UUGCcuGGG- -5'
5259 3' -53.4 NC_001798.1 + 154048 0.66 0.969714
Target:  5'- -cGCCGGGGCGcGGcACGGCuGGAgCgCCg -3'
miRNA:   3'- gaCGGCCCUGUuCUaUGUUG-CCU-G-GG- -5'
5259 3' -53.4 NC_001798.1 + 16856 0.66 0.969714
Target:  5'- -cGCCGGGcgGCAAGGUGCcaaaAACaccaaagcccgaGGGCCg -3'
miRNA:   3'- gaCGGCCC--UGUUCUAUG----UUG------------CCUGGg -5'
5259 3' -53.4 NC_001798.1 + 17978 0.66 0.969714
Target:  5'- -cGUCGGGGgGGGcUGCG-CGG-CCCg -3'
miRNA:   3'- gaCGGCCCUgUUCuAUGUuGCCuGGG- -5'
5259 3' -53.4 NC_001798.1 + 47071 0.66 0.969714
Target:  5'- aUGCCGGGGCGAca-GCGcCGGugUg -3'
miRNA:   3'- gACGGCCCUGUUcuaUGUuGCCugGg -5'
5259 3' -53.4 NC_001798.1 + 98494 0.66 0.969714
Target:  5'- -aGCgGGcGGCGGGA-GCGACGcGCCCc -3'
miRNA:   3'- gaCGgCC-CUGUUCUaUGUUGCcUGGG- -5'
5259 3' -53.4 NC_001798.1 + 105613 0.66 0.969714
Target:  5'- -gGCgGcGGGCGGGcgACGACGGcGCuCCg -3'
miRNA:   3'- gaCGgC-CCUGUUCuaUGUUGCC-UG-GG- -5'
5259 3' -53.4 NC_001798.1 + 79256 0.66 0.969714
Target:  5'- cCUGCUGGcggaguucGACGcGGcgGCcGCGGACCUg -3'
miRNA:   3'- -GACGGCC--------CUGU-UCuaUGuUGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 93286 0.66 0.966638
Target:  5'- -cGUCGGGGCGuaccuGGcGCGcgccGCGGGCCUc -3'
miRNA:   3'- gaCGGCCCUGUu----CUaUGU----UGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 110142 0.66 0.966638
Target:  5'- uUGCCccgcGGGAUcGGAUACAagcuuACGGGCg- -3'
miRNA:   3'- gACGG----CCCUGuUCUAUGU-----UGCCUGgg -5'
5259 3' -53.4 NC_001798.1 + 111080 0.66 0.966638
Target:  5'- gUGCUcGGGCGAGA-----CGGACCCc -3'
miRNA:   3'- gACGGcCCUGUUCUauguuGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 135236 0.66 0.966638
Target:  5'- gCUGCCGGaagccCGGGGgcgGGCGGGCCUg -3'
miRNA:   3'- -GACGGCCcu---GUUCUaugUUGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 12382 0.66 0.966638
Target:  5'- -cGUCGGGACAGcGGUGCGcgccccACGcuCCCg -3'
miRNA:   3'- gaCGGCCCUGUU-CUAUGU------UGCcuGGG- -5'
5259 3' -53.4 NC_001798.1 + 22352 0.66 0.966318
Target:  5'- -cGUCGGGGCGGGGccgcgcauaaUGCGguuccaccuggggGCGGaACCCc -3'
miRNA:   3'- gaCGGCCCUGUUCU----------AUGU-------------UGCC-UGGG- -5'
5259 3' -53.4 NC_001798.1 + 86446 0.67 0.964689
Target:  5'- -aGCCcgGGGACGGGGgccgguucgugagccUGCuuCGGGCCg -3'
miRNA:   3'- gaCGG--CCCUGUUCU---------------AUGuuGCCUGGg -5'
5259 3' -53.4 NC_001798.1 + 150367 0.67 0.963347
Target:  5'- --aCCGGcacGGCGGGcgGC-GCGGGCCCg -3'
miRNA:   3'- gacGGCC---CUGUUCuaUGuUGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 36480 0.67 0.963347
Target:  5'- -cGCCGGGAgGGGGcgcCGGCGcGACgCg -3'
miRNA:   3'- gaCGGCCCUgUUCUau-GUUGC-CUGgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.