miRNA display CGI


Results 21 - 40 of 216 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5259 5' -69 NC_001798.1 + 43533 0.66 0.356773
Target:  5'- cCGCGuCUCCCGCCagggcgGUUUCCCUGGGg- -3'
miRNA:   3'- uGCGU-GGGGGCGG------CGAGGGGGCCCga -5'
5259 5' -69 NC_001798.1 + 62255 0.66 0.356773
Target:  5'- gAC-CGCCCCgaGCCGaucccaggCCCgCCGGGCg -3'
miRNA:   3'- -UGcGUGGGGg-CGGCga------GGG-GGCCCGa -5'
5259 5' -69 NC_001798.1 + 91083 0.66 0.356773
Target:  5'- gGCGCGCCggaggcggCCGUCGUggaCCCCGGuGCg -3'
miRNA:   3'- -UGCGUGGg-------GGCGGCGag-GGGGCC-CGa -5'
5259 5' -69 NC_001798.1 + 151086 0.66 0.356773
Target:  5'- cCGCccgACCCCCGcCCGC-CCCCCGc--- -3'
miRNA:   3'- uGCG---UGGGGGC-GGCGaGGGGGCccga -5'
5259 5' -69 NC_001798.1 + 29303 0.66 0.352436
Target:  5'- cGCGCGCCgCCGggugggugggcugauCgGCcccuauuggUCCCCUGGGCUu -3'
miRNA:   3'- -UGCGUGGgGGC---------------GgCG---------AGGGGGCCCGA- -5'
5259 5' -69 NC_001798.1 + 117759 0.66 0.349564
Target:  5'- gGCGCGCCCuUCGCgGCcacggccaaCCCgUGGGCg -3'
miRNA:   3'- -UGCGUGGG-GGCGgCGa--------GGGgGCCCGa -5'
5259 5' -69 NC_001798.1 + 29800 0.66 0.348849
Target:  5'- gGCGgACCCCggccccgagcggcCGCCGCggcagaCCCCC-GGCa -3'
miRNA:   3'- -UGCgUGGGG-------------GCGGCGa-----GGGGGcCCGa -5'
5259 5' -69 NC_001798.1 + 76277 0.66 0.348849
Target:  5'- cGCGCuccccCCCCCGCCcccccucGCcaccagCCCCCaGGCc -3'
miRNA:   3'- -UGCGu----GGGGGCGG-------CGa-----GGGGGcCCGa -5'
5259 5' -69 NC_001798.1 + 128307 0.66 0.345289
Target:  5'- cCGCGCCCCCccguccgccgccgaaGCCGUcgcCCCCCGcccGCUu -3'
miRNA:   3'- uGCGUGGGGG---------------CGGCGa--GGGGGCc--CGA- -5'
5259 5' -69 NC_001798.1 + 22866 0.66 0.34246
Target:  5'- cCGUcgCCCCGCCGCgcggCCCGGGUUc -3'
miRNA:   3'- uGCGugGGGGCGGCGagg-GGGCCCGA- -5'
5259 5' -69 NC_001798.1 + 80936 0.66 0.34246
Target:  5'- aGCGCcCUCUCGCCGaCgggCCCCCGuGCc -3'
miRNA:   3'- -UGCGuGGGGGCGGC-Ga--GGGGGCcCGa -5'
5259 5' -69 NC_001798.1 + 152509 0.66 0.341755
Target:  5'- cGCGCGCCCCgGCggggGCggagggagggaaUCCCCCccucucgGGGCg -3'
miRNA:   3'- -UGCGUGGGGgCGg---CG------------AGGGGG-------CCCGa -5'
5259 5' -69 NC_001798.1 + 150483 0.66 0.341052
Target:  5'- gGCGCGCCCCgaCGaCUGUggcagaccucccCCCCCGGGg- -3'
miRNA:   3'- -UGCGUGGGG--GC-GGCGa-----------GGGGGCCCga -5'
5259 5' -69 NC_001798.1 + 69072 0.66 0.340349
Target:  5'- cGCGCGCgCgCaGCCGCUCucggcccgcccggaCCCCaGGGCg -3'
miRNA:   3'- -UGCGUGgGgG-CGGCGAG--------------GGGG-CCCGa -5'
5259 5' -69 NC_001798.1 + 123087 0.66 0.338247
Target:  5'- cGCGUACCUcugccuuggguucaaUCGCCGCcUCUgCGGGCUa -3'
miRNA:   3'- -UGCGUGGG---------------GGCGGCGaGGGgGCCCGA- -5'
5259 5' -69 NC_001798.1 + 133887 0.66 0.337549
Target:  5'- -aGCACCCUauaagucuggggccgCGCuCGUUcgauacacggcaaCCCCCGGGCg -3'
miRNA:   3'- ugCGUGGGG---------------GCG-GCGA-------------GGGGGCCCGa -5'
5259 5' -69 NC_001798.1 + 28002 0.66 0.33546
Target:  5'- cCGCGCCCCgGCgCGCUCCCaaccGCa -3'
miRNA:   3'- uGCGUGGGGgCG-GCGAGGGggccCGa -5'
5259 5' -69 NC_001798.1 + 21792 0.66 0.33546
Target:  5'- cCGC-CCCCCGuCCGggCCCgCCucgGGGCg -3'
miRNA:   3'- uGCGuGGGGGC-GGCgaGGG-GG---CCCGa -5'
5259 5' -69 NC_001798.1 + 130439 0.66 0.33546
Target:  5'- cGCGgACUCCCGuCUGggCCCCCGGccacuGCUg -3'
miRNA:   3'- -UGCgUGGGGGC-GGCgaGGGGGCC-----CGA- -5'
5259 5' -69 NC_001798.1 + 54881 0.66 0.33546
Target:  5'- cACGCcCCCCCGCC-C-CCUCCGaGGaCg -3'
miRNA:   3'- -UGCGuGGGGGCGGcGaGGGGGC-CC-Ga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.