miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5262 3' -52.8 NC_001798.1 + 153667 0.66 0.982147
Target:  5'- -cGCGGC-GCGUCCGcGgGCggggACGCGg -3'
miRNA:   3'- gaUGCUGaUGUAGGC-CgUGa---UGCGCa -5'
5262 3' -52.8 NC_001798.1 + 109201 0.66 0.980023
Target:  5'- -gAgGACccggGC-UCCGGCACggacGCGCGUc -3'
miRNA:   3'- gaUgCUGa---UGuAGGCCGUGa---UGCGCA- -5'
5262 3' -52.8 NC_001798.1 + 59690 0.66 0.980023
Target:  5'- -gGCGGCggGCAcgcccgucuUCgGGCGCUugGUGg -3'
miRNA:   3'- gaUGCUGa-UGU---------AGgCCGUGAugCGCa -5'
5262 3' -52.8 NC_001798.1 + 77816 0.66 0.977716
Target:  5'- -cACGGCUACAacccCCGGgACUuccgcaACGCGc -3'
miRNA:   3'- gaUGCUGAUGUa---GGCCgUGA------UGCGCa -5'
5262 3' -52.8 NC_001798.1 + 52487 0.66 0.977716
Target:  5'- cCUGCGGggACGcgcgCCGGCGCagggacgACGCGg -3'
miRNA:   3'- -GAUGCUgaUGUa---GGCCGUGa------UGCGCa -5'
5262 3' -52.8 NC_001798.1 + 106667 0.66 0.977716
Target:  5'- -cGCGcCUGCGUUCGGUcagGCUGCuCGUg -3'
miRNA:   3'- gaUGCuGAUGUAGGCCG---UGAUGcGCA- -5'
5262 3' -52.8 NC_001798.1 + 97115 0.66 0.97522
Target:  5'- gCUGCGcuucugGCUgGCGUCCGGCGau-CGCGc -3'
miRNA:   3'- -GAUGC------UGA-UGUAGGCCGUgauGCGCa -5'
5262 3' -52.8 NC_001798.1 + 95167 0.66 0.97522
Target:  5'- aCUACGGC-AUggCCGGCAacgacCGCGUg -3'
miRNA:   3'- -GAUGCUGaUGuaGGCCGUgau--GCGCA- -5'
5262 3' -52.8 NC_001798.1 + 49695 0.66 0.97522
Target:  5'- gCUGCGAcCUGgAgagCUGGCGCcagUugGCGUg -3'
miRNA:   3'- -GAUGCU-GAUgUa--GGCCGUG---AugCGCA- -5'
5262 3' -52.8 NC_001798.1 + 104972 0.66 0.974166
Target:  5'- uCUugGACaUGCGcccgucucgaaagUCGGCGCUGCGgGUg -3'
miRNA:   3'- -GAugCUG-AUGUa------------GGCCGUGAUGCgCA- -5'
5262 3' -52.8 NC_001798.1 + 146892 0.66 0.972524
Target:  5'- ---aGGCUGC-UCCGcGCACcgGCGCGc -3'
miRNA:   3'- gaugCUGAUGuAGGC-CGUGa-UGCGCa -5'
5262 3' -52.8 NC_001798.1 + 127500 0.66 0.972524
Target:  5'- gUAUGACgugccggaggGCAUCCGGCGCcaccuuCGCa- -3'
miRNA:   3'- gAUGCUGa---------UGUAGGCCGUGau----GCGca -5'
5262 3' -52.8 NC_001798.1 + 84050 0.67 0.969624
Target:  5'- -cGCGAgCUGCAcCCGGgGCaUGCGCa- -3'
miRNA:   3'- gaUGCU-GAUGUaGGCCgUG-AUGCGca -5'
5262 3' -52.8 NC_001798.1 + 25727 0.67 0.966511
Target:  5'- --cCGGCgcccccgACGUCuCGGCGCUggGCGCGc -3'
miRNA:   3'- gauGCUGa------UGUAG-GCCGUGA--UGCGCa -5'
5262 3' -52.8 NC_001798.1 + 97468 0.67 0.966511
Target:  5'- -cGCGGCUGgGggCCGGCG--GCGCGa -3'
miRNA:   3'- gaUGCUGAUgUa-GGCCGUgaUGCGCa -5'
5262 3' -52.8 NC_001798.1 + 26312 0.67 0.966511
Target:  5'- gCUGCGGCc-CGUCUacguGGCGCUgggGCGCGa -3'
miRNA:   3'- -GAUGCUGauGUAGG----CCGUGA---UGCGCa -5'
5262 3' -52.8 NC_001798.1 + 34588 0.67 0.96318
Target:  5'- -cGCGGCgcgGCGUCuCGGUGggACGCGg -3'
miRNA:   3'- gaUGCUGa--UGUAG-GCCGUgaUGCGCa -5'
5262 3' -52.8 NC_001798.1 + 54358 0.67 0.962834
Target:  5'- cCUGCGcCUcgcgGCGUCCGGCccaccggggggccGCgGCGCGg -3'
miRNA:   3'- -GAUGCuGA----UGUAGGCCG-------------UGaUGCGCa -5'
5262 3' -52.8 NC_001798.1 + 99743 0.67 0.959624
Target:  5'- -gGCGACUGCAUcggCCGGgAUgccCGCGa -3'
miRNA:   3'- gaUGCUGAUGUA---GGCCgUGau-GCGCa -5'
5262 3' -52.8 NC_001798.1 + 71759 0.67 0.959624
Target:  5'- -gACGGCgcuCAUCUGGCucgACGUGUa -3'
miRNA:   3'- gaUGCUGau-GUAGGCCGugaUGCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.