miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5262 5' -60.9 NC_001798.1 + 34611 0.66 0.715012
Target:  5'- cGCGGGCaaaggGCggcggCGGCGGGGgggGGGGggGg -3'
miRNA:   3'- -CGUCCG-----CGa----GCCGCUCCa--CCUCgaCa -5'
5262 5' -60.9 NC_001798.1 + 54385 0.66 0.705304
Target:  5'- -gGGGgGCcgCGGCGcGGUcggcgGGAGCUGc -3'
miRNA:   3'- cgUCCgCGa-GCCGCuCCA-----CCUCGACa -5'
5262 5' -60.9 NC_001798.1 + 5250 0.66 0.705304
Target:  5'- -gGGGCGCgcggGGCGGGGggaaaGGAGgaGg -3'
miRNA:   3'- cgUCCGCGag--CCGCUCCa----CCUCgaCa -5'
5262 5' -60.9 NC_001798.1 + 15456 0.66 0.69945
Target:  5'- gGCGGGgGgUCgcguggguagacgugGGCGGGGgggucgugGGGGCUGg -3'
miRNA:   3'- -CGUCCgCgAG---------------CCGCUCCa-------CCUCGACa -5'
5262 5' -60.9 NC_001798.1 + 68122 0.66 0.695537
Target:  5'- cGCAcGGCcaagaCGGCGAGGgcGGAGUUGg -3'
miRNA:   3'- -CGU-CCGcga--GCCGCUCCa-CCUCGACa -5'
5262 5' -60.9 NC_001798.1 + 23716 0.66 0.68572
Target:  5'- cCGGGCgGCccCGGCG-GGUcGAGCUGg -3'
miRNA:   3'- cGUCCG-CGa-GCCGCuCCAcCUCGACa -5'
5262 5' -60.9 NC_001798.1 + 94070 0.66 0.68572
Target:  5'- aGCuGGUGgaUcGCGAGGUGGAacaGCUGa -3'
miRNA:   3'- -CGuCCGCgaGcCGCUCCACCU---CGACa -5'
5262 5' -60.9 NC_001798.1 + 122064 0.66 0.675862
Target:  5'- -uGGGCGCgUCGGacgcgGAGGcGGuGCUGg -3'
miRNA:   3'- cgUCCGCG-AGCCg----CUCCaCCuCGACa -5'
5262 5' -60.9 NC_001798.1 + 35419 0.66 0.675862
Target:  5'- cGCGGGgGCcuaaugCGGCGGGaggcGUGGGccGCUGg -3'
miRNA:   3'- -CGUCCgCGa-----GCCGCUC----CACCU--CGACa -5'
5262 5' -60.9 NC_001798.1 + 32901 0.66 0.675862
Target:  5'- uCGGGgGCagGGgGAGGUGGGGggGg -3'
miRNA:   3'- cGUCCgCGagCCgCUCCACCUCgaCa -5'
5262 5' -60.9 NC_001798.1 + 152237 0.66 0.674874
Target:  5'- gGCGGcCGCUCGGggcCGGGGUccgcccgGGAGCUcGUg -3'
miRNA:   3'- -CGUCcGCGAGCC---GCUCCA-------CCUCGA-CA- -5'
5262 5' -60.9 NC_001798.1 + 80319 0.66 0.665969
Target:  5'- cGCccuGGCGCUCGGCcu--UGGAGCUc- -3'
miRNA:   3'- -CGu--CCGCGAGCCGcuccACCUCGAca -5'
5262 5' -60.9 NC_001798.1 + 153075 0.66 0.656051
Target:  5'- gGCGGGCGgagCGGCGGGGcGGcGCcGg -3'
miRNA:   3'- -CGUCCGCga-GCCGCUCCaCCuCGaCa -5'
5262 5' -60.9 NC_001798.1 + 24550 0.66 0.656051
Target:  5'- --cGGCGC-CGGCGGuGGUGGcGGCg-- -3'
miRNA:   3'- cguCCGCGaGCCGCU-CCACC-UCGaca -5'
5262 5' -60.9 NC_001798.1 + 27187 0.67 0.646115
Target:  5'- cGCGGGCGCggGGgGAGGggcgGGGGaaGc -3'
miRNA:   3'- -CGUCCGCGagCCgCUCCa---CCUCgaCa -5'
5262 5' -60.9 NC_001798.1 + 15064 0.67 0.626218
Target:  5'- -gGGGCGCgCGG-GGGGUGGuuuGUUGg -3'
miRNA:   3'- cgUCCGCGaGCCgCUCCACCu--CGACa -5'
5262 5' -60.9 NC_001798.1 + 2757 0.67 0.626218
Target:  5'- aGCAGGUccGCggcggCGGCGGcGGcGGAGCUc- -3'
miRNA:   3'- -CGUCCG--CGa----GCCGCU-CCaCCUCGAca -5'
5262 5' -60.9 NC_001798.1 + 36076 0.67 0.626218
Target:  5'- uGCGGGCGCgggguaGGUG-GGUGG-GCggGUg -3'
miRNA:   3'- -CGUCCGCGag----CCGCuCCACCuCGa-CA- -5'
5262 5' -60.9 NC_001798.1 + 36558 0.67 0.616272
Target:  5'- gGCGGGgGCgcgCGGCGGccGGgcgGGGGCg-- -3'
miRNA:   3'- -CGUCCgCGa--GCCGCU--CCa--CCUCGaca -5'
5262 5' -60.9 NC_001798.1 + 36516 0.67 0.616272
Target:  5'- gGCGGGgGCgcgCGGCGGccGGgcgGGGGCg-- -3'
miRNA:   3'- -CGUCCgCGa--GCCGCU--CCa--CCUCGaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.