Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5267 | 3' | -54.4 | NC_001798.1 | + | 31669 | 0.67 | 0.913999 |
Target: 5'- ------cCGGGCCcgcgCCGcCCGCCGUGc -3' miRNA: 3'- uuuuuuaGCCCGGa---GGCcGGUGGUAC- -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 153840 | 0.67 | 0.913999 |
Target: 5'- -------gGGGCCUCCGG-CGCCu-- -3' miRNA: 3'- uuuuuuagCCCGGAGGCCgGUGGuac -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 24187 | 0.67 | 0.913999 |
Target: 5'- -----cUgGGGCCUggcgcacguggCGGCCGCCGUGg -3' miRNA: 3'- uuuuuuAgCCCGGAg----------GCCGGUGGUAC- -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 86232 | 0.67 | 0.894846 |
Target: 5'- ------cUGGGCCcgCUgauGGCCACCGUGc -3' miRNA: 3'- uuuuuuaGCCCGGa-GG---CCGGUGGUAC- -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 120208 | 0.67 | 0.894846 |
Target: 5'- aGAGGAGcUCGGGCC-CCGGgccguuggcccCCGCCGa- -3' miRNA: 3'- -UUUUUU-AGCCCGGaGGCC-----------GGUGGUac -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 148076 | 0.67 | 0.894846 |
Target: 5'- gAAGGAAaCGGGCCgggggCCggGGCCGCUAg- -3' miRNA: 3'- -UUUUUUaGCCCGGa----GG--CCGGUGGUac -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 61466 | 0.67 | 0.901476 |
Target: 5'- -------gGGGCCUCCGgGCC-CCGg- -3' miRNA: 3'- uuuuuuagCCCGGAGGC-CGGuGGUac -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 146642 | 0.67 | 0.901476 |
Target: 5'- ------gCGGGCaUCCGGCgGCCGg- -3' miRNA: 3'- uuuuuuaGCCCGgAGGCCGgUGGUac -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 58471 | 0.67 | 0.907861 |
Target: 5'- -----uUCGGGCCgUgCGGCC-CCGUc -3' miRNA: 3'- uuuuuuAGCCCGG-AgGCCGGuGGUAc -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 3023 | 0.67 | 0.907861 |
Target: 5'- ------gCGGGCCgggcUCCGGCCAgCCccGg -3' miRNA: 3'- uuuuuuaGCCCGG----AGGCCGGU-GGuaC- -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 65724 | 0.67 | 0.907861 |
Target: 5'- cAGGGAGUCGaGGaCCUUCagGGCCGgCAUGa -3' miRNA: 3'- -UUUUUUAGC-CC-GGAGG--CCGGUgGUAC- -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 104671 | 0.67 | 0.907861 |
Target: 5'- -----cUCGuagcGGCCgCCGGCCGCCGc- -3' miRNA: 3'- uuuuuuAGC----CCGGaGGCCGGUGGUac -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 152364 | 0.67 | 0.907861 |
Target: 5'- ------cCGGGUCUCCuccucccgccgGGCCGCCGc- -3' miRNA: 3'- uuuuuuaGCCCGGAGG-----------CCGGUGGUac -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 72111 | 0.67 | 0.910346 |
Target: 5'- -cAAAAUUGGGCgcgcugaucacccucCUcgaaCCGGCCACCcgGg -3' miRNA: 3'- uuUUUUAGCCCG---------------GA----GGCCGGUGGuaC- -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 120683 | 0.66 | 0.940939 |
Target: 5'- gAAGGAGUCGGGCagaaacagaUCGGCCGuCCGg- -3' miRNA: 3'- -UUUUUUAGCCCGga-------GGCCGGU-GGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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