miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5267 3' -54.4 NC_001798.1 + 31669 0.67 0.913999
Target:  5'- ------cCGGGCCcgcgCCGcCCGCCGUGc -3'
miRNA:   3'- uuuuuuaGCCCGGa---GGCcGGUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 153840 0.67 0.913999
Target:  5'- -------gGGGCCUCCGG-CGCCu-- -3'
miRNA:   3'- uuuuuuagCCCGGAGGCCgGUGGuac -5'
5267 3' -54.4 NC_001798.1 + 24187 0.67 0.913999
Target:  5'- -----cUgGGGCCUggcgcacguggCGGCCGCCGUGg -3'
miRNA:   3'- uuuuuuAgCCCGGAg----------GCCGGUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 86232 0.67 0.894846
Target:  5'- ------cUGGGCCcgCUgauGGCCACCGUGc -3'
miRNA:   3'- uuuuuuaGCCCGGa-GG---CCGGUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 120208 0.67 0.894846
Target:  5'- aGAGGAGcUCGGGCC-CCGGgccguuggcccCCGCCGa- -3'
miRNA:   3'- -UUUUUU-AGCCCGGaGGCC-----------GGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 148076 0.67 0.894846
Target:  5'- gAAGGAAaCGGGCCgggggCCggGGCCGCUAg- -3'
miRNA:   3'- -UUUUUUaGCCCGGa----GG--CCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 61466 0.67 0.901476
Target:  5'- -------gGGGCCUCCGgGCC-CCGg- -3'
miRNA:   3'- uuuuuuagCCCGGAGGC-CGGuGGUac -5'
5267 3' -54.4 NC_001798.1 + 146642 0.67 0.901476
Target:  5'- ------gCGGGCaUCCGGCgGCCGg- -3'
miRNA:   3'- uuuuuuaGCCCGgAGGCCGgUGGUac -5'
5267 3' -54.4 NC_001798.1 + 58471 0.67 0.907861
Target:  5'- -----uUCGGGCCgUgCGGCC-CCGUc -3'
miRNA:   3'- uuuuuuAGCCCGG-AgGCCGGuGGUAc -5'
5267 3' -54.4 NC_001798.1 + 3023 0.67 0.907861
Target:  5'- ------gCGGGCCgggcUCCGGCCAgCCccGg -3'
miRNA:   3'- uuuuuuaGCCCGG----AGGCCGGU-GGuaC- -5'
5267 3' -54.4 NC_001798.1 + 65724 0.67 0.907861
Target:  5'- cAGGGAGUCGaGGaCCUUCagGGCCGgCAUGa -3'
miRNA:   3'- -UUUUUUAGC-CC-GGAGG--CCGGUgGUAC- -5'
5267 3' -54.4 NC_001798.1 + 104671 0.67 0.907861
Target:  5'- -----cUCGuagcGGCCgCCGGCCGCCGc- -3'
miRNA:   3'- uuuuuuAGC----CCGGaGGCCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 152364 0.67 0.907861
Target:  5'- ------cCGGGUCUCCuccucccgccgGGCCGCCGc- -3'
miRNA:   3'- uuuuuuaGCCCGGAGG-----------CCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 72111 0.67 0.910346
Target:  5'- -cAAAAUUGGGCgcgcugaucacccucCUcgaaCCGGCCACCcgGg -3'
miRNA:   3'- uuUUUUAGCCCG---------------GA----GGCCGGUGGuaC- -5'
5267 3' -54.4 NC_001798.1 + 120683 0.66 0.940939
Target:  5'- gAAGGAGUCGGGCagaaacagaUCGGCCGuCCGg- -3'
miRNA:   3'- -UUUUUUAGCCCGga-------GGCCGGU-GGUac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.