miRNA display CGI


Results 1 - 20 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5267 5' -61.1 NC_001798.1 + 2014 0.66 0.738716
Target:  5'- aGGCG-GCCGUGgcgggcccgcagaGCCGGuugcccaGGGC-CGCCa -3'
miRNA:   3'- -CCGUaCGGCAUg------------CGGCC-------UCCGcGCGG- -5'
5267 5' -61.1 NC_001798.1 + 102546 0.66 0.737782
Target:  5'- cGGCAgGCCGcACGCgGucagcggcggguggcGGGGCGCGg- -3'
miRNA:   3'- -CCGUaCGGCaUGCGgC---------------CUCCGCGCgg -5'
5267 5' -61.1 NC_001798.1 + 70084 0.66 0.734034
Target:  5'- cGCAcGCCGgucgccAUGUCGGAcaGCGCGCUc -3'
miRNA:   3'- cCGUaCGGCa-----UGCGGCCUc-CGCGCGG- -5'
5267 5' -61.1 NC_001798.1 + 150896 0.66 0.734034
Target:  5'- cGCAccGCCGcccccGCGCCGG-GGCGCuCUu -3'
miRNA:   3'- cCGUa-CGGCa----UGCGGCCuCCGCGcGG- -5'
5267 5' -61.1 NC_001798.1 + 66036 0.66 0.734034
Target:  5'- cGCAUGCCGcggguCGCCc--GGCaCGCCa -3'
miRNA:   3'- cCGUACGGCau---GCGGccuCCGcGCGG- -5'
5267 5' -61.1 NC_001798.1 + 53241 0.66 0.734034
Target:  5'- aGCGcgGCCGUggGCGUccugCGGcaGCGCGCCg -3'
miRNA:   3'- cCGUa-CGGCA--UGCG----GCCucCGCGCGG- -5'
5267 5' -61.1 NC_001798.1 + 14334 0.66 0.734034
Target:  5'- aGGCGUGCggucgcguuuguUGUAUcggacgcgggGCCGGuGGGUGCgGCCc -3'
miRNA:   3'- -CCGUACG------------GCAUG----------CGGCC-UCCGCG-CGG- -5'
5267 5' -61.1 NC_001798.1 + 15502 0.66 0.734034
Target:  5'- uGGUGUGgUGggggGCGUuuucgcugCGGAGGCGCuGCUg -3'
miRNA:   3'- -CCGUACgGCa---UGCG--------GCCUCCGCG-CGG- -5'
5267 5' -61.1 NC_001798.1 + 153409 0.66 0.731216
Target:  5'- cGGCccGCuCGcGCGCCcaGGAcccccgucgggccaGGCGCGCg -3'
miRNA:   3'- -CCGuaCG-GCaUGCGG--CCU--------------CCGCGCGg -5'
5267 5' -61.1 NC_001798.1 + 17086 0.66 0.724611
Target:  5'- cGCcgGUCGgguccACGCCGGAcgauuguucccGGC-CGCCc -3'
miRNA:   3'- cCGuaCGGCa----UGCGGCCU-----------CCGcGCGG- -5'
5267 5' -61.1 NC_001798.1 + 139050 0.66 0.724611
Target:  5'- ----aGCCGcUGCgGCUGGAGGcCGCggGCCa -3'
miRNA:   3'- ccguaCGGC-AUG-CGGCCUCC-GCG--CGG- -5'
5267 5' -61.1 NC_001798.1 + 10612 0.66 0.724611
Target:  5'- uGGCGaGCgGUu--CCGG-GGCGCGCa -3'
miRNA:   3'- -CCGUaCGgCAugcGGCCuCCGCGCGg -5'
5267 5' -61.1 NC_001798.1 + 26473 0.66 0.724611
Target:  5'- cGCAgauacGCUGgGCGUCGGccGCGgGCCg -3'
miRNA:   3'- cCGUa----CGGCaUGCGGCCucCGCgCGG- -5'
5267 5' -61.1 NC_001798.1 + 27492 0.66 0.724611
Target:  5'- gGGCggGCgCGggaaaaaagcCGCgCGGGGGCGC-CCg -3'
miRNA:   3'- -CCGuaCG-GCau--------GCG-GCCUCCGCGcGG- -5'
5267 5' -61.1 NC_001798.1 + 72553 0.66 0.724611
Target:  5'- cGGCAUGUaucacgACGCCa-AGcGCGCGCUg -3'
miRNA:   3'- -CCGUACGgca---UGCGGccUC-CGCGCGG- -5'
5267 5' -61.1 NC_001798.1 + 116502 0.66 0.724611
Target:  5'- uGCugGUGCCGgccuucuCG-CGGGGGCGCuGCUg -3'
miRNA:   3'- cCG--UACGGCau-----GCgGCCUCCGCG-CGG- -5'
5267 5' -61.1 NC_001798.1 + 4072 0.66 0.724611
Target:  5'- cGGCccGCgGU-CGCCGcGGGGgucCGgGCCg -3'
miRNA:   3'- -CCGuaCGgCAuGCGGC-CUCC---GCgCGG- -5'
5267 5' -61.1 NC_001798.1 + 17126 0.66 0.724611
Target:  5'- cGCGaGCgguaGUGCGCgGuGAGGCGCGauuCCg -3'
miRNA:   3'- cCGUaCGg---CAUGCGgC-CUCCGCGC---GG- -5'
5267 5' -61.1 NC_001798.1 + 51828 0.66 0.723664
Target:  5'- gGGUcUGCgGgacGCGCCugcacacGGAGGgGCGCg -3'
miRNA:   3'- -CCGuACGgCa--UGCGG-------CCUCCgCGCGg -5'
5267 5' -61.1 NC_001798.1 + 146728 0.66 0.715114
Target:  5'- gGGC--GCCGUGC-CCGGAGauccauuaaGC-CGCCg -3'
miRNA:   3'- -CCGuaCGGCAUGcGGCCUC---------CGcGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.