miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5270 3' -54.6 NC_001798.1 + 148855 0.66 0.959475
Target:  5'- -gGGCG-GCUUCUCGugCcCGCCcCCc -3'
miRNA:   3'- agUUGCuCGAGGAGCugGaGUGGuGG- -5'
5270 3' -54.6 NC_001798.1 + 2796 0.66 0.959475
Target:  5'- --cGCGGGCUCCgCGGCagCGCCggGCCc -3'
miRNA:   3'- aguUGCUCGAGGaGCUGgaGUGG--UGG- -5'
5270 3' -54.6 NC_001798.1 + 138735 0.66 0.95575
Target:  5'- cCGGCGcGCUCCgCGGCCcCgGCgACCg -3'
miRNA:   3'- aGUUGCuCGAGGaGCUGGaG-UGgUGG- -5'
5270 3' -54.6 NC_001798.1 + 28642 0.66 0.95575
Target:  5'- --cGCGAGCgggCCgaccgCGACCgguuccggCGCCGCg -3'
miRNA:   3'- aguUGCUCGa--GGa----GCUGGa-------GUGGUGg -5'
5270 3' -54.6 NC_001798.1 + 135180 0.66 0.95575
Target:  5'- uUCucCGGGCUCCagGcccagcuCCUgGCCGCCc -3'
miRNA:   3'- -AGuuGCUCGAGGagCu------GGAgUGGUGG- -5'
5270 3' -54.6 NC_001798.1 + 117843 0.66 0.95575
Target:  5'- cUCAACGGGg-CCUCGcccguCCUCAgCC-CCu -3'
miRNA:   3'- -AGUUGCUCgaGGAGCu----GGAGU-GGuGG- -5'
5270 3' -54.6 NC_001798.1 + 99207 0.66 0.95575
Target:  5'- aCAugGAGCUCaagcCGGCgaaggUCGCCACg -3'
miRNA:   3'- aGUugCUCGAGga--GCUGg----AGUGGUGg -5'
5270 3' -54.6 NC_001798.1 + 24170 0.66 0.953407
Target:  5'- gCGGCGGGCcgCUUCGGCUggggCcuggcgcacguggcgGCCGCCg -3'
miRNA:   3'- aGUUGCUCGa-GGAGCUGGa---G---------------UGGUGG- -5'
5270 3' -54.6 NC_001798.1 + 51379 0.66 0.952204
Target:  5'- -gGACGAGCUCaacuacgaggaggaCGACUacccCGCCGCCg -3'
miRNA:   3'- agUUGCUCGAGga------------GCUGGa---GUGGUGG- -5'
5270 3' -54.6 NC_001798.1 + 67322 0.66 0.951799
Target:  5'- aCGACG-GCggUUCGGCCaUCcCCGCCg -3'
miRNA:   3'- aGUUGCuCGagGAGCUGG-AGuGGUGG- -5'
5270 3' -54.6 NC_001798.1 + 3332 0.66 0.949318
Target:  5'- gCGGCGGGCUUCccgcgggcgucgUCGccgucguggcgguugGCgUCGCCGCCg -3'
miRNA:   3'- aGUUGCUCGAGG------------AGC---------------UGgAGUGGUGG- -5'
5270 3' -54.6 NC_001798.1 + 86908 0.66 0.947618
Target:  5'- gCGugGAGCgCCg-GGCCUC-CCGCa -3'
miRNA:   3'- aGUugCUCGaGGagCUGGAGuGGUGg -5'
5270 3' -54.6 NC_001798.1 + 31907 0.66 0.947618
Target:  5'- gUCGGacuCGGGCcccgcggCCUCGuCCUCGCCucuuCCu -3'
miRNA:   3'- -AGUU---GCUCGa------GGAGCuGGAGUGGu---GG- -5'
5270 3' -54.6 NC_001798.1 + 135758 0.66 0.943204
Target:  5'- -aGACGAaucCUCCggCGGCCg-GCCGCCg -3'
miRNA:   3'- agUUGCUc--GAGGa-GCUGGagUGGUGG- -5'
5270 3' -54.6 NC_001798.1 + 117947 0.66 0.943204
Target:  5'- aUCGGCGGuaUCCaCGGCCacCGCUGCCa -3'
miRNA:   3'- -AGUUGCUcgAGGaGCUGGa-GUGGUGG- -5'
5270 3' -54.6 NC_001798.1 + 70248 0.66 0.943204
Target:  5'- -gGACGAGCcggcguuucugUCCgCGGCCaaacugcaCGCCGCCa -3'
miRNA:   3'- agUUGCUCG-----------AGGaGCUGGa-------GUGGUGG- -5'
5270 3' -54.6 NC_001798.1 + 141466 0.66 0.943204
Target:  5'- --uGCGAGCUgCU-GACCggcUCGCCGCg -3'
miRNA:   3'- aguUGCUCGAgGAgCUGG---AGUGGUGg -5'
5270 3' -54.6 NC_001798.1 + 46318 0.66 0.943204
Target:  5'- -aGGCGGGCgCCUCGugCacgCAgUCGCCg -3'
miRNA:   3'- agUUGCUCGaGGAGCugGa--GU-GGUGG- -5'
5270 3' -54.6 NC_001798.1 + 4720 0.66 0.942749
Target:  5'- gCGGCaGGCUCgUCGacgGCCUCcccggacgccgggGCCGCCu -3'
miRNA:   3'- aGUUGcUCGAGgAGC---UGGAG-------------UGGUGG- -5'
5270 3' -54.6 NC_001798.1 + 130241 0.67 0.938554
Target:  5'- ---cCGGGuCUCCgggCGGCC-CGCCACg -3'
miRNA:   3'- aguuGCUC-GAGGa--GCUGGaGUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.